PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678299023
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family bHLH
Protein Properties Length: 320aa    MW: 35139.9 Da    PI: 5.924
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678299023genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.5e-134493255
               HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
               r +h+  E+rRR++iN++++ Lr l+P +    ++K + a+ L ++++Y++ Lq
  678299023 44 RSKHSVTEQRRRSKINERYQILRGLIPDS----DQKRDTASFLLEVIHYVQFLQ 93
               899*************************9....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.5E-2042114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.8694292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.77E-1743115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.31E-134497No hitNo description
PfamPF000106.7E-114493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-104898IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MKPGKNHQEE EEEEDEEFCG KRDAMPSTNL SKDGKSSDKA NVTRSKHSVT EQRRRSKINE  60
RYQILRGLIP DSDQKRDTAS FLLEVIHYVQ FLQEKVQKYE GSYQTWSSEP TKLMPWRNSH  120
WPAHNFVSQP QTIKSGPCAT FPGRVDENSA LRHSGQQNPV ELEAPCGSID QETELSNSAM  180
GIPLHLQANL PNPSVTDGAF SHVLHGPLPD GPPTECPSAC DALNHQGELT VEGGTISISS  240
VYSQRLLNSL TQALELTGLD LSQATVSVQI NLGRQVDGSS ISGIRSPKDH AIPVIHQDAG  300
AFQEAGGSEG VDRAQKRQKT
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678299023
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027151692.11e-125transcription factor BIM2 isoform X2
SwissprotQ9CAA46e-82BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A0H3Y8Y91e-123A0A0H3Y8Y9_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.L01158.1.p1e-110(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44262337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-80BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]