PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

WRKY

Protein Properties

Length: 350aa MW: 37870.8 Da PI: 6.5073

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678297148	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.8	3.5e-31	169	227	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs+fpr+YY+C+s+ gC+++k+vers++dp++++itY++eHnh+ 678297148 169 SDLWAWRKYGQKPIKGSPFPRAYYKCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHQ 227 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.1E-31	163	229	IPR003657	WRKY domain
PROSITE profile	PS50811	32.191	163	229	IPR003657	WRKY domain
SuperFamily	SSF118290	5.62E-26	166	229	IPR003657	WRKY domain
SMART	SM00774	4.8E-37	168	228	IPR003657	WRKY domain
Pfam	PF03106	1.6E-25	170	227	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MCSQWMENNY QGDLTDIIRA SNCGGRGGGG GAGEAEPWEF PTNYLANPDE DFGDPFTHFG 60 DPLLRDTDAQ VSGFLHPSTF FKAGFEEAGG GFPVGKATPE PPCADSPAAQ KRLLVQTDGF 120 LTKMDGSDMP ISSPRITGTK RRKNQAKKVV CIPAPLPANA RSSGEVVPSD LWAWRKYGQK 180 PIKGSPFPRA YYKCSSSKGC SARKQVERSR TDPNMLVITY TSEHNHQWPT QRNALAGSTR 240 YPASRKTQNP METHETPPSA ASASSSSSTV KKESGHQDST IYNNPTLPGS NHYDNDHLFA 300 ESLETLLARG FPADGEGGGA LPNNPFTFFS WNCDHGGDDD LLPHPDAKTG

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MCSQWMENNY QGDLTDIIRA SNCGGRGGGG GAGEAEPWEF PTNYLANPDE DFGDPFTHFG  60
DPLLRDTDAQ VSGFLHPSTF FKAGFEEAGG GFPVGKATPE PPCADSPAAQ KRLLVQTDGF  120
LTKMDGSDMP ISSPRITGTK RRKNQAKKVV CIPAPLPANA RSSGEVVPSD LWAWRKYGQK  180
PIKGSPFPRA YYKCSSSKGC SARKQVERSR TDPNMLVITY TSEHNHQWPT QRNALAGSTR  240
YPASRKTQNP METHETPPSA ASASSSSSTV KKESGHQDST IYNNPTLPGS NHYDNDHLFA  300
ESLETLLARG FPADGEGGGA LPNNPFTFFS WNCDHGGDDD LLPHPDAKTG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	6e-23	143	230	2	80	Disease resistance protein RRS1
5w3x_D	6e-23	143	230	2	80	Disease resistance protein RRS1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	23	30	GGRGGGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00171	DAP	Transfer from AT1G30650	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678297148

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096716.1	2e-95	probable WRKY transcription factor 14
Swissprot	Q9SA80	4e-69	WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBL	A0A2G9I5D2	6e-93	A0A2G9I5D2_9LAMI; Uncharacterized protein
STRING	XP_010036632.1	5e-80	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6701	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30650.1	2e-65	WRKY DNA-binding protein 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]