PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678294819
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family bHLH
Protein Properties Length: 619aa    MW: 70194 Da    PI: 6.1556
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678294819genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.71e-13416463355
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                r+h   Er+RR++iN++f  L +++P+      +K++K++iL +++eY+++L+
  678294819 416 RNHVLSERKRREKINERFLILGSIIPSG-----GKVDKVSILDHTIEYLRELE 463
                579999********************98.....8****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.1E-4713195IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.336413462IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-17416479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.26E-13416467No hitNo description
PfamPF000104.1E-11416463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16417477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-15419468IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MELEDQKEIP QNLREQLALA VRSIRWSYAI FWSRSPLDNG RLEWYDGYYN GEIKTRKTVQ  60
STEANTDQLG LQRTDQLQEL YESLSLGETN HQAKRPTAAL IPEDLSNAEW YFLVCMSFRF  120
DIGQGLPGMT LDKNEAIWLC NAHRADTRFF SRSLLAKATI KTIVCFPHLG GVVELGTSEL  180
VQEDMNLIHH VKMIFLKNPN VDHESIFNND HVIDCQVPGP ENTPLDCPSE EHSPNDCSDD  240
FVDNLLREKS NLVDDAEGET AASQILNFQF LDDANSNCLN NPMSSSDCAS ETYQDPEPVL  300
PQIEVKGVRN RTRECDRNNS RDMKKMDTHY HSVLSSLLKS SHQLILGPYF RNANPESSFI  360
SWMRDGPTGN QVHNCVEPQR LLKKALIEVP RLHLSLRSEG AKKSSNSRQE VDETDRNHVL  420
SERKRREKIN ERFLILGSII PSGGKVDKVS ILDHTIEYLR ELERKLEGLE SYKQAMELER  480
PVDAVERTSD NYGSNTIDHS TKKASTSRRS IHDADKSGGK NKRPKFRDSS ADDVTVQVSD  540
REVLIESQCS WTENMIIEFV GAVSKLRLDI QTFDSSNVNG ILSMKMKAKC KGLKAPSASV  600
IRQALHKVIS QEMKKLGIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-13131959192Transcription factor MYC3
4rqw_B1e-13131959192Transcription factor MYC3
4rs9_A1e-13131959192Transcription factor MYC3
4yz6_A1e-13131959192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1421426ERKRRE
2422427RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMap678294819
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080947.10.0transcription factor EGL1 isoform X1
TrEMBLN0DQT80.0N0DQT8_9LAMI; BHLH transcription factor
STRINGMigut.E01090.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45762435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-129bHLH family protein