PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678294618
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C3H
Protein Properties Length: 425aa    MW: 45243.9 Da    PI: 8.2006
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678294618genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.51.7e-114470127
               --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
               ++++ C +f+++G+C yG+rC+F+H++
  678294618 44 PGEPDCIYFLKSGFCGYGNRCRFNHPR 70
               5789*********************96 PP
2zf-CCCH36.58.1e-1297122227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                ++++C+++++tG+Ck+G +CkF+H++
  678294618  97 GEKECSYYLKTGHCKFGVTCKFHHPQ 122
                6789********************97 PP
3zf-CCCH35.71.4e-11261287127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +++++C++++rtG+Ck+G +Ck++H+p
  678294618 261 PGRPECQHYLRTGECKFGTTCKYHHPP 287
                689**********************97 PP
4zf-CCCH35.22.1e-11309333327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++C++++++G Ck+G++CkF H++
  678294618 309 ARICSHYSKNGVCKFGPSCKFDHPM 333
                589********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.4E-54370IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6434371IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-94570IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-64872IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-54971IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.01496123IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-497122IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-997122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-698124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4101121IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-5260287IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.91260288IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-9261287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-5264287IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-4266287IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-6306333IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.925306334IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6308335IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-8309333IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5310331IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MERYSESQSM EGATLDPVED WVAPGEPMWK LGLVDGPPSY PERPGEPDCI YFLKSGFCGY  60
GNRCRFNHPR DRRMAMGALR SGGGDYPERA GQPLCQGEKE CSYYLKTGHC KFGVTCKFHH  120
PQPSSTPFPV EDAGHELLAG PASMPAPALY SNLQGPSVQS SQQFGLIQGN WPIARPAMFP  180
GSYVPGAYGP MLFAPGMVPV SAWTPYPAHV RSGFSPVGAA PGYGITQQLS PSAPAYPGPY  240
ISISTGASSS SEKEPAFPQR PGRPECQHYL RTGECKFGTT CKYHHPPEWG SSKTSFLLSP  300
MGLPLRPGAR ICSHYSKNGV CKFGPSCKFD HPMRALSYSS SGSSLTGMPV TPYPAGSVNA  360
TLAPSSSSDP GPNKQHLPPQ MPSISSSSAS VGSFLASRMD SQLTIQPSVQ SNISSGPGTS  420
SSTCQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap678294618
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012858954.11e-165PREDICTED: zinc finger CCCH domain-containing protein 34-like
SwissprotQ5NAW21e-105C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A4D8Z7M81e-162A0A4D8Z7M8_SALSN; Uncharacterized protein
STRINGMigut.G00186.1.p1e-164(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-100C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]