PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678293235
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family Trihelix
Protein Properties Length: 411aa    MW: 46831.2 Da    PI: 6.6333
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678293235genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix72.48.2e-23109205185
   trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                +Wt+ +v++L++a+++++e+  ++            +kk++W+++sk+m +rg+ +sp+qC++k+++lnk+yk++++  +++ ++e++++ +++d +
  678293235 109 KWTDTMVRVLVTAVSYTNEEAAAEFargprrksitlQKKGKWKAISKVMTDRGYFVSPQQCEDKFNDLNKKYKRLNDLLGRGtSCEVVENPSLLDMV 205
                7**************888887753223446667888**********************************************669999998888766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.5E-20107232No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MDVNMTSMSS IQGNDASCAR AFNMQGTVRP HHHHLQQERL PGQGSSIGFT SSIHENTGTS  60
LNHEKMISTA DMGRSVSDDG DPSLLEEVSE GRKDANGSKK SGSPWHRVKW TDTMVRVLVT  120
AVSYTNEEAA AEFARGPRRK SITLQKKGKW KAISKVMTDR GYFVSPQQCE DKFNDLNKKY  180
KRLNDLLGRG TSCEVVENPS LLDMVDHISE KAKEEVKRIL SSKHLHYEEM CSYHNGNRLN  240
LPPDPELRHS LRLALMLKDD QDEEDNDMRS HLNNENGEGD HSSPLGGSEK RMDDLLGSSS  300
KRGKHNHNAE HFSHKGFSSF HGNDGRQTSS ESTHAPQEQL ASQRNLEVEE QRLRIHEQMV  360
QLEKERLKWI EFSMQEDEEL KAMKIEIQRM KVENERMALE LKQKEMILDT T
Cis-element ? help Back to Top
SourceLink
PlantRegMap678293235
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101525.11e-139uncharacterized protein LOC105179584 isoform X1
TrEMBLA0A2G9GZ521e-142A0A2G9GZ52_9LAMI; Uncharacterized protein
STRINGXP_009799706.11e-123(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76001830
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-101sequence-specific DNA binding transcription factors