PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676794970
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GRAS
Protein Properties Length: 816aa    MW: 92695.1 Da    PI: 8.4248
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676794970genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3681.2e-1124428131373
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                l++lL++cA+avs +d + a++lL ++++++s++gd ++Rla+yf++ L+arla+ ++++y al++++ts    s+ l+a++++  ++P+ k + + aN+
  676794970 442 LRTLLVSCAQAVSVNDRKTADELLRQVRQHSSSYGDGTERLAHYFANSLEARLAGIGTQVYTALSAKKTS---ASDMLKAYQTYISICPFKKTAIIFANH 538
                6789***************************************************************999...9************************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 I+   ++++++HiiDf+is+G+QWp++++ La R++ + +lRiTg++ p+ g   +e + etg+rLa+++++ ++pfe+n  +a+++e+++le+L++++
  676794970 539 NIMHMSANAKTIHIIDFGISYGFQWPPMIHRLAWRRGVSCKLRITGIELPQRGfrPAEGVMETGHRLARYCQRYNIPFEYNG-IAQKWETIKLEDLKLRE 637
                ***************************************************99*****************************.7**************** PP

       GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                gE +aVn+ ++  +llde+v+++s+rd+vLklvk+++P+v++ +    ++n++ F++rf eal +ys+lfd+ +++l re+  r++ E+e+ grei+nvv
  676794970 638 GEFVAVNSLFRFRNLLDETVAVHSPRDAVLKLVKKIKPNVFIPAILSGSYNAPFFVTRFKEALFHYSSLFDMCDTNLTREDPMRVMFEKEFYGREIMNVV 737
                **************************************************************************************************** PP

       GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                aceg+er+er e++++W++r  +aGF+++pl+++ +++ kl+++  + s+++ v+++s++l++gWk+r +++ S W
  676794970 738 ACEGTERVERPESYKQWQSRALRAGFRQLPLDKELVQKLKLMVESGYkSKEFDVDQDSNWLLQGWKGRIVYASSTW 813
                *******************************************9988899************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.254416793IPR005202Transcription factor GRAS
PfamPF035144.3E-110442813IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 816 aa     Download sequence    Send to blast
MISPIKWISI RGDRIFKTCL VEADNSLLGD NDYWRQLCIG QRVTPKDEHL TKGSKVYRLY  60
TSQQKREKKD SISWRLLRIK GFGFSCGTIL RVCLGFLRKL MGSYYAGFPG SFDDFDFNNQ  120
PDFLELPSTL SPPAPPHQDP YSQQNLAAAD DADFSDSVLK YISQVLMEED MEEKPCMFHD  180
ALSLQAAEKS LYEALGEKYP DHSEPLTIPS PAPLVNSPDG SSSGYASSTT TTSSEWSFDC  240
MENNRPSWLH TPVPNNFVFK STSTRSSPKS VGGSKAIYKS SFSDDLVANM FNDSEMAFQF  300
KRGKEEASKF LPKSSQLVID VESYVPASGS KTNDPKEHNY VPYRRTGKKN HWREDENLAE  360
ERSKKQSAAN VDETELSEMF DKILLFGQPK ENPLCILHEN FFKEAAKDSS SRKGHKGDTT  420
QQASGQKPAA SGNSYVKDIP DLRTLLVSCA QAVSVNDRKT ADELLRQVRQ HSSSYGDGTE  480
RLAHYFANSL EARLAGIGTQ VYTALSAKKT SASDMLKAYQ TYISICPFKK TAIIFANHNI  540
MHMSANAKTI HIIDFGISYG FQWPPMIHRL AWRRGVSCKL RITGIELPQR GFRPAEGVME  600
TGHRLARYCQ RYNIPFEYNG IAQKWETIKL EDLKLREGEF VAVNSLFRFR NLLDETVAVH  660
SPRDAVLKLV KKIKPNVFIP AILSGSYNAP FFVTRFKEAL FHYSSLFDMC DTNLTREDPM  720
RVMFEKEFYG REIMNVVACE GTERVERPES YKQWQSRALR AGFRQLPLDK ELVQKLKLMV  780
ESGYKSKEFD VDQDSNWLLQ GWKGRIVYAS STWVPM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-474408133374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1343349RRTGKKN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676794970
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006409947.10.0scarecrow-like protein 33
RefseqXP_024016820.10.0scarecrow-like protein 33
SwissprotP0C8830.0SCL33_ARATH; Scarecrow-like protein 33
TrEMBLV4LLG70.0V4LLG7_EUTSA; Uncharacterized protein
STRINGXP_006409947.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.10.0GRAS family protein