PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676794150
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 362aa    MW: 41040.4 Da    PI: 6.9312
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676794150genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.5e-05202221120
                EEETTTTEEESSHHHHHHHH CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                ++Cp C k+F+r  n++ H+
  676794150 202 FSCPLCFKTFNRYNNMQMHM 221
                89*****************9 PP
2zf-C2H212.90.00033286308123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                + C  Cgk F  k + ++H +++
  676794150 286 FACRRCGKAFAVKGDWRTHEKNC 308
                78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.0E-5202221IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.66202229IPR007087Zinc finger, C2H2
PROSITE patternPS000280204224IPR007087Zinc finger, C2H2
SuperFamilySSF576673.64E-6272306No hitNo description
Gene3DG3DSA:3.30.160.601.0E-5273306IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.767286306IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MSDPACIFNN GFIDYYDYSF NYSTSLSHIY NSNESFYNPR NTTDLNPKSI SPGSPPLREA  60
LPLLSLSPIH KHKETIVPHH EYYFMETTEN SSNSNFLDHD LDQCQESTHH HDVTVDLHLG  120
LPNLGGNAIA YGGGGSSSSD VILDSTDQEH HHDDHQDRHQ YQGVEVTLAS DHHDGHGGVQ  180
RGSHHHYWIP TPSQILMGPT QFSCPLCFKT FNRYNNMQMH MWGHGSQYRK GPESLKGTQP  240
TAMLRLPCYC CAPGCKNNID HPRARPLKDF RTLQTHYKRK HGARPFACRR CGKAFAVKGD  300
WRTHEKNCGK LWYCSCGSDF KHKRSLKDHV KAFGNGHVPC FGVDCFGDHE DEEAASDVEQ  360
QE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676794150
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3118110.0AJ311811.2 Arabidopsis thaliana mRNA for WIP4 protein (At3g20880 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145538.10.0PREDICTED: zinc finger protein WIP4
SwissprotQ8W0300.0ZWIP4_ARATH; Zinc finger protein WIP4
TrEMBLA0A397ZDQ60.0A0A397ZDQ6_BRACM; Uncharacterized protein
TrEMBLA0A3P5YVZ90.0A0A3P5YVZ9_BRACM; Uncharacterized protein (Fragment)
STRINGBra031239.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20880.10.0WIP domain protein 4
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]