PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676794140
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NF-YA
Protein Properties Length: 292aa    MW: 32511.7 Da    PI: 9.8958
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676794140genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA106.22.7e-33155211158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                +ep+YVNaKQyq+Il+RRq+Rak+e ekkl +ksrkpylheSRh+hA+rRpRg+gGrF
  676794140 155 QEPVYVNAKQYQAILRRRQARAKAELEKKL-IKSRKPYLHESRHQHAMRRPRGTGGRF 211
                69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.5E-37153214IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.849154214IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.1E-28156211IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.6E-24157179IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860159179IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.6E-24188211IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MHSKTDSGNQ IVSEVRHRHT SSSSINSLNP WHRAAAACNA SSFVEEPGDK SVALDNQNNW  60
ESTNGSKSPS NRDGNGNKEP QVTTSPQSAG DFSEKSQELL RPGITQPPHP QLGWASSNPY  120
QDPYYAGMMG SYPLTYVPYG GMPHSRMPLP PEMAQEPVYV NAKQYQAILR RRQARAKAEL  180
EKKLIKSRKP YLHESRHQHA MRRPRGTGGR FAKKTNTEAS QLKAGGKSNA CRTQSPTSSN  240
SEQPEAWNDE YRNQSDDMQS SAYKRRDEAD CSGQQWNSIS SNHPSQARLA IK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-19155211258NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676794140
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBNU338840.0U33884.1 Brassica napus clone bncbf-b1 CCAAT-binding factor B subunit homolog mRNA, complete cds.
GenBankBNU338850.0U33885.1 Brassica napus clone bncbf-b2 CCAAT-binding factor B subunit homolog mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013697367.10.0nuclear transcription factor Y subunit A-9-like isoform X3
SwissprotQ945M91e-148NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBLA0A0D3CHV51e-179A0A0D3CHV5_BRAOL; Uncharacterized protein
TrEMBLA0A3P6ELK81e-179A0A3P6ELK8_BRAOL; Uncharacterized protein
STRINGBo5g105110.11e-179(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132681829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.11e-150nuclear factor Y, subunit A9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]