PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Function |

Cis-element |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

676791612

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

GRAS

Protein Properties

Length: 138aa MW: 15889.3 Da PI: 9.0899

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676791612	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	81.6	1.4e-25	31	138	149	260
GRAS 149 spesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh 248 s ke ++etg+rLa+++++ +vpfe+n+ +a+++e++++++L++k+gE ++Vn+ + ++ lde+v ++s+rd++Lkl+++ +P+v++ + ++ 676791612 31 S---LLKEGVQETGHRLARYCQKYKVPFEYNA-IARKWETIKVQDLKIKEGELVVVNSLFCFKNPLDETVMVNSPRDAILKLIRKANPNVFIQAVLSGSY 126 3...47899*********************.7************************************************************** PP GRAS 249 nsesFlerflea 260 n++ F++rf ea 676791612 127 NAPFFVTRFREA 138 *******996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	17.954	1	138	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.9E-23	31	138	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
METYQEGLNN DPKNQELLDG VRRLEISASH SLLKEGVQET GHRLARYCQK YKVPFEYNAI 60 ARKWETIKVQ DLKIKEGELV VVNSLFCFKN PLDETVMVNS PRDAILKLIR KANPNVFIQA 120 VLSGSYNAPF FVTRFREA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676791612

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009110940.1	1e-57	PREDICTED: scarecrow-like protein 14
Refseq	XP_022546185.1	4e-58	scarecrow-like protein 14
Swissprot	Q9XE58	5e-55	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A078FR76	2e-56	A0A078FR76_BRANA; BnaA08g29000D protein
TrEMBL	A0A397YQS6	3e-56	A0A397YQS6_BRACM; Uncharacterized protein
TrEMBL	M4EPG8	3e-56	M4EPG8_BRARP; Uncharacterized protein
STRING	Bra030688.1-P	5e-57	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	2e-57	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]