PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676791504
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 392aa    MW: 43366.2 Da    PI: 8.371
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676791504genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.3e-05142165123
                EEETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                ++C  Cg+ Fs   +L++Hi   H
  676791504 142 FPCMTCGEIFSKTNLLEHHIAIkH 165
                89******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576124No hitNo description
PROSITE profilePS501579.286142170IPR007087Zinc finger, C2H2
PROSITE patternPS000280144165IPR007087Zinc finger, C2H2
SuperFamilySSF563999.21E-11167214No hitNo description
Gene3DG3DSA:3.90.228.109.8E-4169290IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563999.21E-11241391No hitNo description
Gene3DG3DSA:3.90.228.102.0E-5320391IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MAARKLGSLL RQHFFSLFFL FVGCFFLPKG GDCRQKRRKK KLRTVSSGSG LSSSWTYLKR  60
VFLSTTRISK SRNQTHPNGQ LTTLASARSS QNSLVTLVQP ETTTTTNNNN NQPDPETRNE  120
NGFSDISSSD SPLFLPLRSE MFPCMTCGEI FSKTNLLEHH IAIKHAVSEL VDGESSTNIV  180
KIIFKSGWPE QGNKIPEIHR ILKVHNSPKI LARFEEYREY VKAKASRCSS NGGGGRRWDD  240
ERCVVDGNEL LRFYCSTFMC NLGQNGNSNL CGHQYCSICG IIGSGFSPKL DGIATLATGW  300
RGHVAVPEEV EEEFGFMNVK RAMLVCRVVA GRVGSDLIPD DDDVDKNDGG YDSLVGQGSG  360
SKSGALLRID DEELLVFNPR AVLPCFVIVY TV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13641RRKKKL
23642RRKKKLR
Cis-element ? help Back to Top
SourceLink
PlantRegMap676791504
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325770.0AC232577.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS012H21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018433029.10.0PREDICTED: uncharacterized protein LOC108805604
TrEMBLA0A1J3E5S10.0A0A1J3E5S1_NOCCA; Uncharacterized protein
STRINGBra018369.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79192640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-164C2H2 family protein