PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676791068 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | bZIP | ||||||||
Protein Properties | Length: 165aa MW: 18737.1 Da PI: 6.0212 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32.9 | 1.4e-10 | 19 | 64 | 5 | 50 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 + rr NReA r++R++Kka+++ Le++vk L++ N+ L +l+ 676791068 19 SNKRRSCGNREAVRKYREKKKARTAYLEDEVKRLQSMNEHLLRKLQ 64 67899999*********************************98886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.2E-12 | 11 | 82 | No hit | No description |
SMART | SM00338 | 2.0E-8 | 14 | 82 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 7.0E-15 | 15 | 65 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.232 | 17 | 83 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.31E-8 | 18 | 65 | No hit | No description |
CDD | cd14686 | 1.21E-9 | 27 | 65 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MDLFTLCQDP QENDHSDSSN KRRSCGNREA VRKYREKKKA RTAYLEDEVK RLQSMNEHLL 60 RKLQSQAMVE TEIIRLRTLL VEMQGKIDDE LGGLSFQEQC NGSGFVFKEG QMDPNTISIS 120 CNNTDGCNVA TRNAMCEVAS VECEEGKALH EPLHSFVPHS PPFSR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of salt stress response. Functions as a negative transcriptional regulator of salt stress acclimation response by regulating cation homeostasis (PubMed:18703123, PubMed:19248824). Regulates negatively the expression of genes contributing to ion and osmotic homeostasis during salt stress, such as the Na(+) transporter HKT1, the Na(+)/H(+) antiporter SOS1, the aquaporin PIP2-1 and the glutamine synthetase GLN1-3. In addition, targets genes with functions in plant growth and development, such as argonaute 4 (AGO4) and cyclophilin 19 (CYP19) (PubMed:19248824). {ECO:0000269|PubMed:18703123, ECO:0000269|PubMed:19248824}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676791068 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:18703123, PubMed:19248824). Induced by osmotic stress (PubMed:19248824). {ECO:0000269|PubMed:18703123, ECO:0000269|PubMed:19248824}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL049711 | 7e-98 | AL049711.3 Arabidopsis thaliana DNA chromosome 3, BAC clone F4F15. | |||
GenBank | CP002686 | 7e-98 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018513653.1 | 2e-85 | PREDICTED: basic leucine zipper 24-like | ||||
Refseq | XP_018513654.1 | 2e-85 | PREDICTED: basic leucine zipper 24-like | ||||
Refseq | XP_022573725.1 | 2e-85 | basic leucine zipper 24 isoform X1 | ||||
Refseq | XP_022573726.1 | 2e-85 | basic leucine zipper 24 isoform X1 | ||||
Refseq | XP_022573727.1 | 2e-85 | basic leucine zipper 24 isoform X1 | ||||
Swissprot | Q8GTS1 | 7e-75 | BZP24_ARATH; Basic leucine zipper 24 | ||||
TrEMBL | M4EXC7 | 2e-97 | M4EXC7_BRARP; Uncharacterized protein | ||||
STRING | Bra033464.1-P | 4e-98 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15172 | 15 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51960.2 | 4e-78 | basic leucine zipper 24 |