PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676790246
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 419aa    MW: 45915.2 Da    PI: 9.809
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676790246genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.6e-05180202223
                EETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 Cp Cg++F+  ++L+ H+ + H
  676790246 180 ACPQCGEVFPKLETLEIHQAVrH 202
                6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280179202IPR007087Zinc finger, C2H2
PROSITE profilePS501578.559179207IPR007087Zinc finger, C2H2
SuperFamilySSF563993.26E-22204415No hitNo description
Gene3DG3DSA:3.90.228.101.1E-13207416IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MAPLPFLPNQ TKSQTCLSSD SKKMNRKKKT PPPPPQTQTQ KLKQKTVSSS SSSSSWSQIK  60
NLLSCKQIEG PRVHDPSKIV SSSSCGSSLC KFSDVIYGNV RVIHRSDHSP ESSNLGQDAG  120
LLNRKPVTRG SSSSVRSNGC GAYSSYSSSK AMHFRKLSGC YECHMVVDPS RYPISPRVCA  180
CPQCGEVFPK LETLEIHQAV RHAVSELGPE DSGRNIVDII FKSSWLRKDS PIYKIERILK  240
VQNTQRTIQR FEDCRDAVKS HAHASTRKEP RSAADGNELL RFHCTTVSCS LGSRGSTSLC  300
SNFPGCRVCT IIRHGFHAKT LRLGGGSNEI KGVRTMASSG RAHDALRCFD QRRAMLVCRV  360
IAGRVRRVVS DAPEDENGSG SYDSVAGVAG VYTNLDDLVV YNPKAILPCF VVIYKVSES
Cis-element ? help Back to Top
SourceLink
PlantRegMap676790246
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013592621.10.0PREDICTED: uncharacterized protein LOC106300905
RefseqXP_013746890.20.0uncharacterized protein LOC106449724
TrEMBLA0A1J3EID50.0A0A1J3EID5_NOCCA; Uncharacterized protein
STRINGXP_006393516.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-151C2H2-like zinc finger protein