PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676789940
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 275aa    MW: 29869.6 Da    PI: 8.6065
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676789940genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011110132123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ykC+ Cgk F++   L  H  +H
  676789940 110 YKCSVCGKAFPSYQALGGHKASH 132
                9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.7E-13110133IPR007087Zinc finger, C2H2
SuperFamilySSF576672.32E-9110132No hitNo description
PROSITE profilePS5015711.801110137IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.6E-4110132IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0043110132IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280112132IPR007087Zinc finger, C2H2
SuperFamilySSF576672.32E-9162189No hitNo description
PfamPF139129.1E-14167191IPR007087Zinc finger, C2H2
SMARTSM003550.17167189IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.099167189IPR007087Zinc finger, C2H2
PROSITE patternPS000280169189IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010200Biological Processresponse to chitin
GO:0042538Biological Processhyperosmotic salinity response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MALEAMNSPT TPSSFTVRKD RIETTDDLMN DAVFMEPWLK RKRSKRQRSH SPSSSSSSPP  60
RSRPKSHQSQ DLTEDEYLAL CLLMLAKDHP SDHHPQPPPP PQQESTKASY KCSVCGKAFP  120
SYQALGGHKA SHRIKPPTDD STTAPSIAIT GEKHPPSTSV APSGKIHECS ICHKVFPTGQ  180
ALGGHKRCHY EGNLGGGGGG SKSVSHSGSV SSTVSEERSN RGFIDLNLPA LPELSLHHNP  240
VVVDEEILSP LTGKKPLLLT DRDQLIKNQD LSLRI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13845LKRKRSKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. Acts as a negative regulator of abscisic acid (ABA) signaling during seed germination. Probably involved in jasmonate (JA) early signaling response. May regulate the expression of the JA biosynthesis gene LOX3 and control the expression of TIFY10A/JAZ1, a key repressor in the JA signaling cascade. May act as a positive regulator of leaf senescence. Has been identified as a suppressor of the deficiency of yeast snf4 mutant to grow on non-fermentable carbon source. {ECO:0000269|PubMed:10929106, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:18216250, ECO:0000269|PubMed:20619483, ECO:0000269|PubMed:21852415, ECO:0000269|PubMed:22709441}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676789940
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, salt, cold, dehydration and the monovalent and divalent cations Li(+), Na(+), K(+), Cs(+), Ca(2+) and Mg(2+). {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:20619483, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013720588.11e-126zinc finger protein AZF2
SwissprotQ9SSW21e-111AZF2_ARATH; Zinc finger protein AZF2
TrEMBLA0A1J3IJC51e-130A0A1J3IJC5_NOCCA; Zinc finger protein AZF2
STRINGBra001752.1-P1e-124(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102721829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.21e-103zinc-finger protein 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ortiz-Espín A, et al.
    Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions.
    J. Exp. Bot., 2017. 68(5): p. 1025-1038
    [PMID:28184497]