PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676789432
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family WRKY
Protein Properties Length: 554aa    MW: 59670.7 Da    PI: 6.2976
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676789432genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.76.4e-30234293159
                ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+aed +++++tYeg+H h+
  676789432 234 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCAEDMSILITTYEGTHSHP 293
                58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-31219295IPR003657WRKY domain
SuperFamilySSF1182902.09E-27227295IPR003657WRKY domain
PROSITE profilePS5081128.69229295IPR003657WRKY domain
SMARTSM007741.5E-36234294IPR003657WRKY domain
PfamPF031066.8E-27235293IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MEVLLKLPTS DSLLKDKVLE SAQIHEANKD DGDHQDLESA KAEMSEVKEE NEKLKGMLER  60
IESDYKSLKL RFFDIIQQEP SNNPTQDQDM VDLPKATTDL SSFDKERELV SLSLGRRSSS  120
PSDNTSKKEE KTDAISKEVN ADEELNKAGL TLGFNNGNGC EPNGSLSVAH PANTSVENSS  180
EEAPGESWPP SKVNGKRSSP APASGGDVDG ESSQQNHVKR ARVCVRARCD TPTMNDGCQW  240
RKYGQKIAKG NPCPRAYYRC TVAPGCPVRK QVQRCAEDMS ILITTYEGTH SHPLPLSATT  300
MASTTSAAAS MLLSGSSSSS AAEMIGNNLY ENSRFISNNN NSNKSFYSPT LHSPLHPTVT  360
LDLTAPQHSS SSLPSLNFNK FSNSFQRFPS TSLNFSSNSP PSSNSSILNL PALWGNGYSS  420
YAPYPYNNVQ FGTGKTVQNS QSLTETLTKA LTSDPSFHSV IAAAISSMVG SNGEQQNVSP  480
RHPISNNVQK TAATNNNKGC GGYFSSLLMS NIIANNQTGA SLDQPSSQVP PLSMFNNSSS  540
SSSTASFANK EEKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21221295174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676789432
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300780.0KF430078.1 Brassica rapa WRKY transcription factor 72 (WRKY72) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400030.10.0probable WRKY transcription factor 72
SwissprotQ9LXG80.0WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBLV4LNU90.0V4LNU9_EUTSA; Uncharacterized protein
STRINGXP_006400030.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29592868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.10.0WRKY DNA-binding protein 72