PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676788552
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family FAR1
Protein Properties Length: 1081aa    MW: 123960 Da    PI: 5.3109
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676788552genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR175.88.8e-2462148291
       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                fY++YA++vGF +++++s++skr+g++++ +  Cs+ g+++e++ +     ++r+  +tgCka l++k+++d+kw+++++++eHnHe++p
  676788552  62 FYRDYARSVGFGITIKASRRSKRSGKFIDVKIACSRFGTKRESTAA---IINPRSCPKTGCKAGLHMKRKEDEKWVIYSFVKEHNHEICP 148
                9***************************************999877...99************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.7E-2162148IPR004330FAR1 DNA binding domain
PfamPF105512.2E-25231324IPR018289MULE transposase domain
PfamPF044342.0E-6511544IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.965511547IPR007527Zinc finger, SWIM-type
SMARTSM005752.7E-6522549IPR006564Zinc finger, PMZ-type
CDDcd021742.26E-84815966No hitNo description
Gene3DG3DSA:3.40.50.6203.5E-38816942IPR014729Rossmann-like alpha/beta/alpha sandwich fold
TIGRFAMsTIGR001252.5E-20818885IPR004821Cytidyltransferase-like domain
SuperFamilySSF523742.81E-23818950No hitNo description
PfamPF014677.0E-32820949IPR004821Cytidyltransferase-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009058Biological Processbiosynthetic process
GO:0003824Molecular Functioncatalytic activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1081 aa     Download sequence    Send to blast
MDVEEVEDVA IDLLTRSGGN VDECCEGSTS GNAAAHSLGQ FPTVGELRNG MEFESKEAAY  60
YFYRDYARSV GFGITIKASR RSKRSGKFID VKIACSRFGT KRESTAAIIN PRSCPKTGCK  120
AGLHMKRKED EKWVIYSFVK EHNHEICPDD FYAGVRGKNK PPGALAYKKK KGLQLALEEE  180
DFKLLLEHFM DMQDKQPGFF YALDFDCEKR IRNVFWLDVK AKHDYCSFSD VVLFDMFYVR  240
NRYRIPFAPF VGVNHHRQYV LLGCALIGEE SESAYSWLFR TWLKAVGGQA PGVMITDQDK  300
LLSDVVVEVF PSARHCFCLW NVMSKIHEML NPFVSQDEGF MESFRNCVHG SWTDEQFETS  360
WSEMISKFEL NENEWVHSLF KDRKKWVPHY FDGVCLAGMS GPERSGSIVS HFDQYMNSEA  420
TFKDFFELYM KFMQYRCDGE AKDDIESQSK QPTLRSSLAF EKQLSLIYTD AAFKKFQAEV  480
LGVVSCQLQK EREDGTTAIF RVEDFEKRQN FFVAVNKELL DVCCSCYLFE YQGFLCKHAI  540
LVLQNSDVSC IPSQYILKRW SMNGNNREEE NEKCASIHNR MARFDDLCRR FVKLGEVASL  600
SDEAYKTALQ ILEKSFKNCV SVNSSPKFPS ESDKLMTSGS IGLENEGMLN CASKLSKKKK  660
IQKKRKAYSG PGDATKRSEE LRQETEQVSS RPFTFENCYI PQADMEATEP GSRSAPLGIY  720
YSTQQTIQGG NLHSIQGRMN QYETQPSIQG AGQTGFRGSA IRGCYDIEET LHDMKAEGGG  780
DRSSSLPSEN MSNVTADPTN GDLSTAVQSS PPTDRPVRVY ADGIYDLFHF GHARSLEQAK  840
KSFPTTYLLV GCCNDETTHK YKGRTVMTAE ERYESLRHCK WVDEVIPDAP WVINQEFLDK  900
NRIDYVAHDA LPYADTSGAG KDVYEFVKKV GRFKETMRTE GISTSDIIMR IVKDYNQYVM  960
RNLDRGYSRE DLGIQTVKML RNEWVENADR WVAGFLEIFE EGCHKMGTAI RDRIQERLIR  1020
QIPRNRLENG EDDDTDDQFY EEYFDHDMGS DEDEDERYYD EEEEIEEVKE KTPKTDAKDT  1080
K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4mvc_A1e-6481299992281Choline-phosphate cytidylyltransferase A
4mvc_B1e-6481299992281Choline-phosphate cytidylyltransferase A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676788552
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024004256.10.0protein FAR1-RELATED SEQUENCE 2 isoform X1
SwissprotQ3EBQ30.0FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2
TrEMBLA0A1J3K3V30.0A0A1J3K3V3_NOCCA; Protein FAR1-RELATED SEQUENCE 2
STRINGXP_010510061.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32250.40.0FAR1-related sequence 2
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]