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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676788158 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | bZIP | ||||||||
Protein Properties | Length: 425aa MW: 45805.2 Da PI: 8.0736 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 72.3 | 7.1e-23 | 319 | 381 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L +eN +L+ e+++lk ++++l+se+ 676788158 319 DRELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLNEENASLRAEINKLKSQCEELTSEN 381 689**********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 5.9E-28 | 1 | 104 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 4.2E-14 | 143 | 181 | No hit | No description |
Pfam | PF16596 | 2.6E-13 | 226 | 285 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 4.9E-18 | 312 | 378 | No hit | No description |
SMART | SM00338 | 3.6E-21 | 319 | 383 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.4E-20 | 320 | 381 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.277 | 321 | 384 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.25E-11 | 322 | 378 | No hit | No description |
CDD | cd14702 | 8.83E-25 | 324 | 374 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 326 | 341 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence Send to blast |
MSSNEMEKSS KEKEPKTPPP SSSSSAPPSS QEPSSAVSTG MSTPDWSGFQ AYSPMPPHGF 60 VASSPQPHPY MWGVQHMMPP YGTPPHPYVT MYPPGGMYGH PSMPPGSYPY SPYAIPSPNG 120 MTEASGNTTG GTEGDAKQSE VKEKLPIKRS RGSLGSLNMI TGKNNEPGKT SGASANGAYS 180 KRHNFLVTVG RVLLMVQVKE VMQTLKMTRD LDRTGRMRVL YCFENSPEAA SENGGSANGP 240 RNGSVGTPIQ PVSQTVPIMP MTAAGVPGPP TNLNIGMDYW GAPSAAIPGM HGKTSTPVPG 300 VVAPGSRDGG HSQPWLQDDR ELKRQRRKQS NRESARRSRL RKQAECDELA QRAEVLNEEN 360 ASLRAEINKL KSQCEELTSE NTSLKDQLLS FPSLEGINMD KDDQEPDTNQ IGVAETKVDS 420 YKNST |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 335 | 341 | RRSRLRK |
2 | 335 | 342 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00291 | DAP | Transfer from AT2G35530 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676788158 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT022055 | 0.0 | BT022055.1 Arabidopsis thaliana At2g35530 gene, complete cds. | |||
GenBank | BT026441 | 0.0 | BT026441.1 Arabidopsis thaliana At2g35530 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020884547.1 | 0.0 | bZIP transcription factor 16 | ||||
Refseq | XP_020884548.1 | 0.0 | bZIP transcription factor 16 | ||||
Swissprot | Q501B2 | 0.0 | BZP16_ARATH; bZIP transcription factor 16 | ||||
TrEMBL | D7LHX2 | 0.0 | D7LHX2_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.4__1572__AT2G35530.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3701 | 25 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35530.1 | 0.0 | basic region/leucine zipper transcription factor 16 |
Publications ? help Back to Top | |||
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