PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676788082
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB_related
Protein Properties Length: 743aa    MW: 82070.8 Da    PI: 6.3048
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676788082genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.12e-085193347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +WT +E+e +  a +q G++ +++I ++++  +   q++++++ +
        676788082 51 AWTHQEEECFFTALRQVGKN-FEKITSRVQ-SKNKDQVRHYYYRL 93
                     6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.12E-104398IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-54696IPR009057Homeodomain-like
PROSITE profilePS5129313.0124798IPR017884SANT domain
SMARTSM007171.7E-64896IPR001005SANT/Myb domain
PfamPF002491.4E-65193IPR001005SANT/Myb domain
CDDcd001678.22E-65194No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MQAEKEVLLN TEGPIEEGRI SNQNSNPNIA SSASISVSQF PAKKPTRQWA AWTHQEEECF  60
FTALRQVGKN FEKITSRVQS KNKDQVRHYY YRLVRRMNKL LGPELSLDAK NPKDTNAAML  120
RWWSLLEKYS CKASKLHLKP RRFKLFLEAL EHQLLKDRRK SSRKRACQGE TFSSASLGNI  180
SSHSRDRGLD NRPFKLILCD SQNVKKLGPV RASTRHGESL GGSLGDEKED TVSGRGGRQR  240
RKQGFRKWEK AAIDGVSLVA DAAEHLERTS IDKDMDGQKA CAISKWDYFL ISDLGPARYL  300
TGKSPLSLSS SAEVPLSEAN MQFSAKLKLQ LFPIDECTRR SLEVDKHNPH LELTLSNRKK  360
ISSVLEHLNR KWGNSSCACG ELMLFPYNAR KETVTCHQRW TSDSFLSAAE VHSMVGSPSL  420
FRLRYGWFVQ DASGSFISQV PTSASCPSLE DNMNVDEANE VNMLLTESGP LSKHSTAEQA  480
TSVICTAGDR PAETRDNYEP ASTTIAPFEH LSSGNALSAG EWADSLTNIS IGDLLSEAPD  540
DIDRDCVDPP ATEGSHCLLR DVPFASDSFD AAIAAHILRH QNKPSGLLPV TTSSSSLWDD  600
EDTRDAFSFQ KNRHANSSKM ANVASLGGAG RVDGEPSQLV EAISGDEGPC NLPDQQEDPM  660
EEGTIDPHTM DSPGQTLCGL ADVYWPDSLG PLDLDIRSSK YTEDLNLSES LGGLSRLIAT  720
SLDAFQNCSL FGFDSKKDKS NMV
Cis-element ? help Back to Top
SourceLink
PlantRegMap676788082
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5301600.0AF530160.1 Arabidopsis thaliana myb/SANT domain protein (TKI1) mRNA, complete cds.
GenBankAK2269780.0AK226978.1 Arabidopsis thaliana mRNA for hypothetical protein, clone: RAFL09-39-I17.
GenBankAY0640680.0AY064068.1 Arabidopsis thaliana unknown protein (At2g36960) mRNA, complete cds.
GenBankAY0963760.0AY096376.1 Arabidopsis thaliana unknown protein (At2g36960) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018441746.10.0PREDICTED: TSL-kinase interacting protein 1 isoform X2
SwissprotQ8LJT80.0TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLV4LP170.0V4LP17_EUTSA; Uncharacterized protein
STRINGXP_006410872.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96332124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.10.0TSL-kinase interacting protein 1