PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676787946
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GeBP
Protein Properties Length: 370aa    MW: 42335.7 Da    PI: 4.3812
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676787946genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57396.62.4e-3059154297
     DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                ++++ w+++De+++L  ++d++++t++s+ +d+ afy ++k+ i++++sk+ql++Kir+L k+f ++++++++gk  sf++++d++if+ls++iW+
  676787946  59 NSKMTWTKNDELIILGSIVDYENETKVSYRSDWGAFYAYIKDFIEANFSKKQLIDKIRNLNKRFLDNKARSDDGKGLSFTSTDDDEIFKLSMIIWD 154
                57899******************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.6E-2362154IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MVVRKRLRLG GEQSSDSNQD GLEPRRESPL RKMHEDDVSG MEAMFRRRKQ LKTMSSSSNS  60
KMTWTKNDEL IILGSIVDYE NETKVSYRSD WGAFYAYIKD FIEANFSKKQ LIDKIRNLNK  120
RFLDNKARSD DGKGLSFTST DDDEIFKLSM IIWDSNETES ASHENNDQAN DVPFVDHGRV  180
DENMDQSKDV PCVEHERANE QDMDQAKVDV PDVEHERVNE NLDQEKVVHS VEDEQVNENI  240
DQANAVVPDV EHEPLDENMD KENADVPEAE HVPVSNVSME EIDGVEKEKR EEDGVDEFCA  300
LQDALTATTL YQNLGKYQQK LLLQNLRNLG AQRRKDLSDE WKALLAEDMK LYAKKLTLSA  360
KLAEAVGDSS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269|PubMed:21875893}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676787946
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022557163.11e-140GLABROUS1 enhancer-binding protein-like 3 isoform X6
RefseqXP_022574072.11e-140GLABROUS1 enhancer-binding protein-like 3 isoform X7
SwissprotQ9SJM43e-88STKLI_ARATH; GLABROUS1 enhancer-binding protein-like 3
TrEMBLM4DL631e-138M4DL63_BRARP; Uncharacterized protein
STRINGBra017244.1-P1e-138(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM124401528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36340.17e-62DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]
  2. Nietzsche M, et al.
    STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1.
    Plant Physiol., 2018. 176(2): p. 1773-1792
    [PMID:29192025]