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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676787860 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | TALE | ||||||||
Protein Properties | Length: 632aa MW: 69428.8 Da PI: 6.7746 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.4 | 1.4e-09 | 400 | 437 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + 676787860 400 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 437 554459******************************88 PP | |||||||
2 | BELL | 123.6 | 8e-40 | 259 | 330 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL s+l+eV++rY+qy++q+q+vissFe++ag+gsak+YtslAlk+iSr+FrcLk+aia+qi 676787860 259 ERQEIQMKKAKLSSMLHEVEQRYRQYHQQMQMVISSFEQAAGIGSAKSYTSLALKTISRQFRCLKEAIAGQI 330 79*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.2E-77 | 179 | 328 | IPR006563 | POX domain |
Pfam | PF07526 | 4.1E-47 | 185 | 327 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.26 | 378 | 441 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.48E-12 | 381 | 441 | No hit | No description |
SMART | SM00389 | 2.3E-9 | 381 | 445 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.13E-17 | 382 | 448 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.7E-29 | 384 | 448 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.6E-18 | 398 | 437 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009610 | Biological Process | response to symbiotic fungus | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010197 | Biological Process | polar nucleus fusion | ||||
GO:0010201 | Biological Process | response to continuous far red light stimulus by the high-irradiance response system | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 632 aa Download sequence Send to blast |
MAAYFHGNPP EISAGPDGGL QTLILMNPTT YVQYTQQDDD SNNNNNNNSN NNTNNNNNNS 60 FVFLDSHAPP QNASQQFVGI PLSGHEAASI TAADNISVLH GYPPRVQYSL YSSHQVDPTH 120 QQAACETPRA QQGLSLTLSS QQQQQQHQNQ HQTLHHVGFG SGHGEDIRVG SGSTGSGVTN 180 GIANLVSSKY LKAAQELLDE VVNADSNDIN TKSQLFSTKK GSSGTDNKAV GESSTGAGEG 240 SGGGGEASGK RTVELGTAER QEIQMKKAKL SSMLHEVEQR YRQYHQQMQM VISSFEQAAG 300 IGSAKSYTSL ALKTISRQFR CLKEAIAGQI KAANKSLGEE DSVSGVGRFE GSRLKFVDHH 360 LRQQRALQQL GMIQHPSNNA WRPQRGLPER AVSVLRAWLF EHFLHPYPKD SDKHMLAKQT 420 GLTRSQVSNW FINARVRLWK PMVEEMYMEE MKEQGKAMGS IEKTPNLDQN NEDSASKPTS 480 NQEKSPMGGG GADNYNLNPN HNGELEGVTG MQGSPKRIRT SEETMMQPIN ADFSSNEKLT 540 MKILEERQGM RSDGGYPFMG NFGQYQMDEM SRFEVAVSDQ ELLAQRYSGN NNGVSLTLGL 600 PHCDSLSSTH HQGAKLETDF FRKWICLGGI FS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 1e-16 | 387 | 445 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 1e-16 | 387 | 445 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 1e-16 | 387 | 444 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 1e-16 | 387 | 444 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676787860 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK227272 | 0.0 | AK227272.1 Arabidopsis thaliana mRNA for putative homeodomain transcription factor, complete cds, clone: RAFL11-09-C20. | |||
GenBank | AY072175 | 0.0 | AY072175.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g35940) mRNA, complete cds. | |||
GenBank | AY096548 | 0.0 | AY096548.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g35940) mRNA, complete cds. | |||
GenBank | AY099854 | 0.0 | AY099854.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g35940) mRNA, complete cds. | |||
GenBank | BT008422 | 0.0 | BT008422.1 Arabidopsis thaliana At2g35940 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013683591.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_022554766.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Swissprot | Q9SJ56 | 0.0 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A397ZVY7 | 0.0 | A0A397ZVY7_BRACM; Uncharacterized protein | ||||
STRING | Bra017277.1-P | 0.0 | (Brassica rapa) | ||||
STRING | Bo3g029830.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5008 | 26 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 0.0 | BEL1-like homeodomain 1 |
Publications ? help Back to Top | |||
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