PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676785176 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | NAC | ||||||||
Protein Properties | Length: 240aa MW: 27443.9 Da PI: 9.3818 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 94.5 | 1.7e-29 | 43 | 169 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 ppG+r Ptdeel+ +Lk+ +++kkl+ + +++++iy+++P++L + +k++ +ew+f s+r k ++ gk+ +r+ + gyW+atg ke+ + + l 676785176 43 PPGLRSVPTDEELILGHLKPFLKNKKLPWPSLpVHRANIYESNPQQLSaNYAKGNLNEWFFISERTKINKDGKNLKRSDHGGYWHATGA-KEINA-IKDL 140 9*************************9998877**************9456666777*******************************9.78887.7889 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 v k+tL +y ++p+ +k++W+m+ey l 676785176 141 VSYKTTLSYYVRKKPNEVKSSWLMQEYWL 169 ***************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.58E-34 | 37 | 196 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.928 | 42 | 196 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-15 | 43 | 168 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MTPQRNKRRK RSSSEPETQQ SLPNHDPNMP SSSSSLSAPF VYPPGLRSVP TDEELILGHL 60 KPFLKNKKLP WPSLPVHRAN IYESNPQQLS ANYAKGNLNE WFFISERTKI NKDGKNLKRS 120 DHGGYWHATG AKEINAIKDL VSYKTTLSYY VRKKPNEVKS SWLMQEYWLQ SCDDDNKTQD 180 DDDKTVDYAL CKIYLSPMAK NKQKEDGVDA EALGKVVQPR NVENQQPQPQ PQFCPTPTPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-15 | 43 | 194 | 18 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-15 | 43 | 194 | 18 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-15 | 43 | 194 | 18 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-15 | 43 | 194 | 18 | 163 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-15 | 43 | 194 | 21 | 166 | NAC domain-containing protein 19 |
3swm_B | 6e-15 | 43 | 194 | 21 | 166 | NAC domain-containing protein 19 |
3swm_C | 6e-15 | 43 | 194 | 21 | 166 | NAC domain-containing protein 19 |
3swm_D | 6e-15 | 43 | 194 | 21 | 166 | NAC domain-containing protein 19 |
3swp_A | 6e-15 | 43 | 194 | 21 | 166 | NAC domain-containing protein 19 |
3swp_B | 6e-15 | 43 | 194 | 21 | 166 | NAC domain-containing protein 19 |
3swp_C | 6e-15 | 43 | 194 | 21 | 166 | NAC domain-containing protein 19 |
3swp_D | 6e-15 | 43 | 194 | 21 | 166 | NAC domain-containing protein 19 |
4dul_A | 7e-15 | 43 | 194 | 18 | 163 | NAC domain-containing protein 19 |
4dul_B | 7e-15 | 43 | 194 | 18 | 163 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676785176 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013745280.1 | 4e-71 | NAC domain-containing protein 41 | ||||
Refseq | XP_018460409.1 | 8e-72 | PREDICTED: NAC transcription factor 29-like | ||||
TrEMBL | A0A397ZI18 | 2e-61 | A0A397ZI18_BRACM; Uncharacterized protein | ||||
TrEMBL | D7LVH1 | 7e-62 | D7LVH1_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.5__2087__AT3G56530.1 | 1e-62 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2793 | 15 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56530.1 | 3e-57 | NAC domain containing protein 64 |