PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

676785062

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

C3H

Protein Properties

Length: 282aa MW: 31089.7 Da PI: 8.7601

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676785062	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.3	1.1e-07	103	126	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 e C+ f+ +G C++Gd C F+Hg 676785062 103 GEVCPEFRNGGDCSRGDECGFSHG 126 589********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	2.35E-5	99	130	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0013	100	127	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.836	101	128	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.3E-4	103	128	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.0E-5	104	126	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3	136	159	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MDVEHHNSGH IGRPTVDIPS RKHFSSAKSP SSASSPRRDD KDQKDYCYVS DSDDPYAGDH 60 FRMYEFKIRR CTRSRSHDWT DCPFSHPGEK ARRRDPRRYH YTGEVCPEFR NGGDCSRGDE 120 CGFSHGVFEC WLHPGRYRTE ACKDGKHCKR KICFFAHSPR QLRVLPPPES FVSGGGGSAL 180 SSPASVLSNK NNGCCMFCSH SPTSTLLGLA RSPSSSPPLS PANKAATLSR LSRRCSAVTY 240 KESHGSTLRG FLVISCYHAG SHCVDACLIK AEQPSSPSSA VA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676785062

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013608781.1	1e-128	PREDICTED: zinc finger CCCH domain-containing protein 61-like
Swissprot	Q9FKW2	1e-114	C3H61_ARATH; Zinc finger CCCH domain-containing protein 61
TrEMBL	A0A0D3E6F3	1e-127	A0A0D3E6F3_BRAOL; Uncharacterized protein
TrEMBL	A0A3N6QGN2	1e-127	A0A3N6QGN2_BRACR; Uncharacterized protein
STRING	Bo9g059770.1	1e-127	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2987	27	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44260.1	1e-107	C3H family protein