PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676784370 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 204aa MW: 23701.8 Da PI: 9.7487 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 59.5 | 4.2e-19 | 30 | 72 | 4 | 46 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 + +r+ +s R n+i+KKA ELS+LCd+ev+v++++ +gkl 676784370 30 SAAKKRHSDLSSRENTIFKKATELSILCDVEVCVLYYGRDGKL 72 556789999*********************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.6E-10 | 10 | 78 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 7.28E-16 | 22 | 104 | No hit | No description |
SuperFamily | SSF55455 | 3.27E-16 | 32 | 114 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.1E-13 | 33 | 72 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 12.657 | 34 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-5 | 41 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-5 | 56 | 77 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MESSSCSSTK MRTKLSVRHQ TRFKKSSLSS AAKKRHSDLS SRENTIFKKA TELSILCDVE 60 VCVLYYGRDG KLIKTLPEDQ SKVRDMAERF QNLSEKEKFK KRTNLSQFLN KKIKDEMKRC 120 LENNDNTFLH KVLEFEDSLR TKLRILENKQ TDEPDHQNQN LAVSSSSSFL SADDRCWSNF 180 CRSFCYSSTT STPSMIYQNK NAVY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676784370 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006290011.1 | 2e-54 | agamous-like MADS-box protein AGL53 | ||||
Swissprot | Q7X9N2 | 3e-44 | AGL53_ARATH; Agamous-like MADS-box protein AGL53 | ||||
TrEMBL | R0H119 | 4e-53 | R0H119_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.29827s0112.1.p | 4e-55 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5753 | 9 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27090.1 | 1e-47 | AGAMOUS-like 54 |
Publications ? help Back to Top | |||
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