PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676784136
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bZIP
Protein Properties Length: 326aa    MW: 35894.3 Da    PI: 6.1981
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676784136genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_151.62e-16242299259
                XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                ++ +r+rr++kNRe+A rsR+RK+a++ eLe+ +++Le+eN++L ke+e  +ke ++ 
  676784136 242 AAAQRQRRMIKNRESAARSRERKQAYQVELETLAAKLEQENEKLSKEIEDKRKERYRK 299
                5789*********************************************999988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.7E-13239295No hitNo description
SMARTSM003389.4E-13241305IPR004827Basic-leucine zipper domain
PfamPF001702.6E-15242301IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.415243295IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.06E-10245297No hitNo description
CDDcd147073.14E-17245290No hitNo description
PROSITE patternPS000360248263IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MASFKVMHSS TSRNSDLSRR IPTSSASSSS SIRPQQFRRD PNADQSRLII GGYGGGRNDG  60
YSPTTMTVEG ILHETFASDP PASESSLLDA SISLMDSAPT PMEITTTVTD VGGGAGGTVT  120
RGKSVDEVWR EIVSGEGKGM KEETHDEMMT LEDFLAKATG EDAATVGTGG GGDSEDMDVK  180
IPPERLDYGY DHSAPPPQLN PFQMIDKVEG SIVAFGNGMD VYGGGGARGK RARVMMEPLD  240
KAAAQRQRRM IKNRESAARS RERKQAYQVE LETLAAKLEQ ENEKLSKEIE DKRKERYRKL  300
MEFVIPVVEK PKQQPRFLRR IRSLEW
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676784136
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006403144.11e-158G-box-binding factor 4
SwissprotP427778e-79GBF4_ARATH; G-box-binding factor 4
TrEMBLE4MY821e-157E4MY82_EUTHA; mRNA, clone: RTFL01-45-A18
TrEMBLV4LQ581e-157V4LQ58_EUTSA; Uncharacterized protein
STRINGXP_006403144.11e-158(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38522855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.11e-126bZIP family protein