PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

676783754

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

C3H

Protein Properties

Length: 408aa MW: 48272.9 Da PI: 9.1127

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676783754	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.9	1.5e-07	151	175	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C +++ tG C y +C+F+H+p 676783754 151 ARDCEYYLTTGRCGYNRTCRFNHPP 175 589********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.0012	148	175	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.727	148	176	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	9.42E-5	151	177	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.8E-5	151	175	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.7	177	199	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	10.643	178	200	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MKSSGILGPL KYAERRGAEE RDNEKRIKRQ DRRENSEKRI EESRSMEESK GQGESDGRTD 60 RSRERDPSSR EAERGQGESD GRTDRSRERD PSSREAERGR NPDSGRRECY VRTDRSHERD 120 PRSWEARRLQ ERNQMRHEPV QTSPFPVRPG ARDCEYYLTT GRCGYNRTCR FNHPPNHVAP 180 FFQSGNCNKG SDCAYLHPKD TAPMLQTTTE SSFSMAENKG YDNLQAGERD PRERFQDDVV 240 AGYKRVRIEE GGGYIGWQRV EGQEIVQVRR EIQSWGRQAH QEDMQRQNNE RSPRREIDEE 300 SEEERRMKNH NVKGLKAKEN LHGQEQADME RQVREAEEKA QEQLRIDTAR REARLRNEQF 360 HPIIWIKSES HYQTLGLKEK RAMDFKRRVT RYARQRELSR LFGMQENE

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MKSSGILGPL KYAERRGAEE RDNEKRIKRQ DRRENSEKRI EESRSMEESK GQGESDGRTD  60
RSRERDPSSR EAERGQGESD GRTDRSRERD PSSREAERGR NPDSGRRECY VRTDRSHERD  120
PRSWEARRLQ ERNQMRHEPV QTSPFPVRPG ARDCEYYLTT GRCGYNRTCR FNHPPNHVAP  180
FFQSGNCNKG SDCAYLHPKD TAPMLQTTTE SSFSMAENKG YDNLQAGERD PRERFQDDVV  240
AGYKRVRIEE GGGYIGWQRV EGQEIVQVRR EIQSWGRQAH QEDMQRQNNE RSPRREIDEE  300
SEEERRMKNH NVKGLKAKEN LHGQEQADME RQVREAEEKA QEQLRIDTAR REARLRNEQF  360
HPIIWIKSES HYQTLGLKEK RAMDFKRRVT RYARQRELSR LFGMQENE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676783754

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29600.1	4e-16	C3H family protein