PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676783750

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

C3H

Protein Properties

Length: 1291aa MW: 152180 Da PI: 5.4647

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676783750	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.7	1.1e-09	20	44	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+f++rtG C+yG++C+++H++ 676783750 20 EKDCQFYLRTGRCSYGESCCYNHPK 44 679********************96 PP
2	zf-CCCH	17.3	8.8e-06	1025	1041	11	27
GTS--TTTTT-SS-SSS CS zf-CCCH 11 rtGtCkyGdrCkFaHgp 27 ++G C+yG++C+++H+p 676783750 1025 ENGPCNYGSSCPYNHPP 1041 579************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.61	18	45	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.6E-4	19	44	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.3E-7	20	44	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	44	45	63	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	8.784	46	64	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.634	427	455	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.043	427	454	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.5	1020	1041	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	8.305	1022	1042	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:1.10.287.70	2.0E-17	1096	1180	No hit	No description
SuperFamily	SSF81324	6.8E-18	1099	1191	No hit	No description
Pfam	PF07885	1.8E-13	1104	1181	IPR013099	Potassium channel domain
Gene3D	G3DSA:1.10.287.70	6.9E-15	1209	1287	No hit	No description
SuperFamily	SSF81324	1.7E-14	1210	1278	No hit	No description
Pfam	PF07885	1.3E-12	1211	1277	IPR013099	Potassium channel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1291 aa Download sequence Send to blast
MEENKSGKAQ SSEFPVCPEE KDCQFYLRTG RCSYGESCCY NHPKYFLRGC CRFGSSCVYD 60 HSKEMDDLES MREPSVKDLP DSLFQGQKRR ITESSPNPEK MVTYLLILFD QKDVNSQAKT 120 IEKQRIEPKY NLQEKTLREK QENDNDQQNM EEQRKKDIER QRGEARLKLD QMKQTVFFND 180 MNGVRKRLKE FGIIFKEGDG YEKRITENKN RIRVGIEERS RRSQSKKLIR EHTLNIMADP 240 RENLQDAQRS RSNERESRSM DETEEFPPGF GPRESWRRSD ERYETDSRSW ADNRYDVSRV 300 KTNISSLGYE YSGQTRDYRD SSVEIRENLQ EQRWRDGEMQ ERRSNEEDSR FLQQKKRKDE 360 YEYSDHNESY EGIRENLQQH RPKDAEMQHR RSYETESRFQ QEKRDWRRRF EDRPQMRHEL 420 TSVYPNRPRI KDCPFFLRNG WCRYDDDCKG NHPTHFPQGS HVKNSTEFFH REDRDGAVHM 480 REDPRDRDPR QDAGQRRHGE DWVYRIEMEY ERPLSQINDG IVAEHKARME NRSVDPQENQ 540 AEMRHGNTEV QKGDADEIVE EGEIEGSLGS KSMEMQNVAA HDQQNDSVDA QGQDNNQEQR 600 EGENIEWQRR EAEENVQEHR QKDIEEERRE AEESLEEQRV KENRSVNAQE NQVYLRHGNT 660 EVQKGEKRTE KRRGAEERVN EKRIKQQDRR ENSEKRIEEA KETDTRTYSL RTFSRSMEES 720 KGKDPDLEAS ESDVRTDRSR ERGRNLDLGR ANLILGLIGV TKESQVHRKR KGDEIRIWGR 780 ANLMLGLTKE FQVPGKVTEQ KNGSVCKLFY PKYSDAPRLP ERQALYVKNL TEFFHQMERD 840 RAKLLRQEIH NVDDAHDQQN HNVDAQGEDN LQEERQRDME KERREAEESS EEQKVKENRS 900 VDALENQAEM RHGNTEVQKG DAGEIECKEN VEEHKQRQRE NTEGQRTEAQ ANVQDHKQRD 960 TTVWQRETQE NALEMHNVDA HDQQNHNVDA HGQDNLQEQR QRENNEWQKR ETQENVEEHA 1020 QRDIENGPCN YGSSCPYNHP PTHLAPVRNE GAQEEYQMNM DAFLNNTPSR IQNTTPRAFS 1080 QLTEEETQTV PRAASGSIIM SMYILLSAII SISVYWILGD QYTGKKTKGF VDSIYLFIVT 1140 FSSVGYGDIV PKTDLAKILS SVLVLNGIIC LELFVRCVAN PIRQIQERCI RAINNGNINK 1200 KMKVISSSSW VLLCFFSVFF FLHFHESVAW VDCFYLSVVS ITTVGYGDLG FESLRGRLFA 1260 FFWILANIVA MSLVVSCLEQ EQEQEQEQEP S

Sequence ? help Back to Top

Protein Sequence Length: 1291 aa Download sequence Send to blast

MEENKSGKAQ SSEFPVCPEE KDCQFYLRTG RCSYGESCCY NHPKYFLRGC CRFGSSCVYD  60
HSKEMDDLES MREPSVKDLP DSLFQGQKRR ITESSPNPEK MVTYLLILFD QKDVNSQAKT  120
IEKQRIEPKY NLQEKTLREK QENDNDQQNM EEQRKKDIER QRGEARLKLD QMKQTVFFND  180
MNGVRKRLKE FGIIFKEGDG YEKRITENKN RIRVGIEERS RRSQSKKLIR EHTLNIMADP  240
RENLQDAQRS RSNERESRSM DETEEFPPGF GPRESWRRSD ERYETDSRSW ADNRYDVSRV  300
KTNISSLGYE YSGQTRDYRD SSVEIRENLQ EQRWRDGEMQ ERRSNEEDSR FLQQKKRKDE  360
YEYSDHNESY EGIRENLQQH RPKDAEMQHR RSYETESRFQ QEKRDWRRRF EDRPQMRHEL  420
TSVYPNRPRI KDCPFFLRNG WCRYDDDCKG NHPTHFPQGS HVKNSTEFFH REDRDGAVHM  480
REDPRDRDPR QDAGQRRHGE DWVYRIEMEY ERPLSQINDG IVAEHKARME NRSVDPQENQ  540
AEMRHGNTEV QKGDADEIVE EGEIEGSLGS KSMEMQNVAA HDQQNDSVDA QGQDNNQEQR  600
EGENIEWQRR EAEENVQEHR QKDIEEERRE AEESLEEQRV KENRSVNAQE NQVYLRHGNT  660
EVQKGEKRTE KRRGAEERVN EKRIKQQDRR ENSEKRIEEA KETDTRTYSL RTFSRSMEES  720
KGKDPDLEAS ESDVRTDRSR ERGRNLDLGR ANLILGLIGV TKESQVHRKR KGDEIRIWGR  780
ANLMLGLTKE FQVPGKVTEQ KNGSVCKLFY PKYSDAPRLP ERQALYVKNL TEFFHQMERD  840
RAKLLRQEIH NVDDAHDQQN HNVDAQGEDN LQEERQRDME KERREAEESS EEQKVKENRS  900
VDALENQAEM RHGNTEVQKG DAGEIECKEN VEEHKQRQRE NTEGQRTEAQ ANVQDHKQRD  960
TTVWQRETQE NALEMHNVDA HDQQNHNVDA HGQDNLQEQR QRENNEWQKR ETQENVEEHA  1020
QRDIENGPCN YGSSCPYNHP PTHLAPVRNE GAQEEYQMNM DAFLNNTPSR IQNTTPRAFS  1080
QLTEEETQTV PRAASGSIIM SMYILLSAII SISVYWILGD QYTGKKTKGF VDSIYLFIVT  1140
FSSVGYGDIV PKTDLAKILS SVLVLNGIIC LELFVRCVAN PIRQIQERCI RAINNGNINK  1200
KMKVISSSSW VLLCFFSVFF FLHFHESVAW VDCFYLSVVS ITTVGYGDLG FESLRGRLFA  1260
FFWILANIVA MSLVVSCLEQ EQEQEQEQEP S

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676783750

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15746	9	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29600.1	1e-14	C3H family protein