PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676783506
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C3H
Protein Properties Length: 122aa    MW: 14122.1 Da    PI: 7.9768
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676783506genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH331.1e-102045227
               -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
               +++ C+f++rtG+C yG++C+++H++
  676783506 20 GEKDCQFYLRTGQCGYGESCCYNHPK 45
               7899********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.0E-51845IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.231846IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-62046IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-82045IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-52445IPR000571Zinc finger, CCCH-type
SMARTSM003560.195276IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-65375IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.0945577IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MMKENESGMV QSSEFPVRPG EKDCQFYLRT GQCGYGESCC YNHPKEISER ANLLKCKYFL  60
RGCCRFGSSC AYDHSNEGDD PESMRQAKTI EKQRIKPKYN LQEETLSVKI LKHDMILFST  120
SR
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676783506
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009115226.16e-34PREDICTED: putative zinc finger CCCH domain-containing protein 10
SwissprotQ94AD91e-20C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A078JLS79e-33A0A078JLS7_BRANA; BnaCnng50350D protein
TrEMBLA0A0D3CEK19e-33A0A0D3CEK1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EVQ59e-33A0A3P6EVQ5_BRAOL; Uncharacterized protein
STRINGBo5g060890.12e-33(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15746914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.24e-23C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]