PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676782662

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

Protein Properties

Length: 231aa MW: 26789 Da PI: 4.5744

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676782662	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.2	5.4e-17	29	116	4	98
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + ++ ++ k++++ +p +f+ + g ++ s t+t++++ g + +v++ ++ +++++l++GW+eF++a+ L eg f+ F+++g+s+f +v++f+ 676782662 29 KIIQLSTIKEKMMKIPARFV-RLG--PKLSDTVTIKNPAGLKRSVRV--KRIGDEVWLENGWSEFAEAHLLSEGHFLYFHYEGNSSF--RVMIFD 116 455899999*********.555..55889************..***********************************9..999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.8E-20	20	117	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.55E-20	21	117	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.46E-16	25	116	No hit	No description
PROSITE profile	PS50863	12.252	26	118	IPR003340	B3 DNA binding domain
SMART	SM01019	3.4E-15	27	118	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.3E-14	29	116	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MNTRGRSAVR STSGASQRQQ KPEVKKFIKI IQLSTIKEKM MKIPARFVRL GPKLSDTVTI 60 KNPAGLKRSV RVKRIGDEVW LENGWSEFAE AHLLSEGHFL YFHYEGNSSF RVMIFDVTAS 120 EIEYPLDKVH VISDDDEDEV IEIMDDDEEE EGVTRVESGD DDWSEESSDD DDSSEGVTDL 180 EELLKKKQRV NIYVEEVDSM DETEEEKRVL LRKCTRRLFC YGLFSYRFLA R

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676782662

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013602987.1	2e-84	PREDICTED: B3 domain-containing protein At1g49475 isoform X1
Refseq	XP_013720044.1	2e-84	B3 domain-containing protein At1g49475-like isoform X1
Swissprot	Q9XIB4	2e-69	Y1475_ARATH; B3 domain-containing protein At1g49475
TrEMBL	A0A0D3DJK8	4e-83	A0A0D3DJK8_BRAOL; Uncharacterized protein
STRING	Bo8g011590.1	7e-84	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1591	25	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49475.1	1e-63	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]