PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676782570
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family M-type_MADS
Protein Properties Length: 1166aa    MW: 130426 Da    PI: 5.063
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676782570genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF306.9e-101452240
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
               +i +k  r ++f+kR +g+  KA+ L+ L da++av+  
  676782570 14 KITDKNSRATSFTKRSHGLYIKASQLCLLSDAQIAVLAT 52
               7999********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.395555IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-10568IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.11E-14679IPR002100Transcription factor, MADS-box
CDDcd002663.64E-16656No hitNo description
PfamPF003191.8E-91455IPR002100Transcription factor, MADS-box
SMARTSM007852.4E-8618685IPR012948AARP2CN
PfamPF081429.5E-13631684IPR012948AARP2CN
SMARTSM013628.4E-1578581153IPR007034Ribosome biogenesis protein BMS1/TSR1, C-terminal
PfamPF049507.9E-1118591155IPR007034Ribosome biogenesis protein BMS1/TSR1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042254Biological Processribosome biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1166 aa     Download sequence    Send to blast
MVKRGTKRKI DIEKITDKNS RATSFTKRSH GLYIKASQLC LLSDAQIAVL ATPSSENSNV  60
SFFSFSHSSV ENVVSAYLSG ERLAPVSIMD SKEMREDLGV CFESSSLGLG HWWDDEERFK  120
TPQDILEGIK SIERLLSHVK RLRTKDAMNV IDQTLTIDDD EDLVPAKRLR TKEGMKVIDQ  180
TLTIVDDDDL VPVKRLRTKD ALNVIDQIIT IDDDDSLPAA SSNDDTAERG QILSNSDNFC  240
NNDGSPPVQG KLEDWSDMDL DQLLHECDDD KHTTEAEVHH QVSENLCGNN NNALLLGNQT  300
QEEEDHHHQI VAVSENSCNH NNNALLPAGN MDNINELLDL DTDLDLETIF KGMTDKDLDE  360
FAATFMCHTM GRSGTQVNKA HKTRFASKSS RNLHKTSLQD GGRISKSDGN HVKGARAARL  420
QRGKMLREQK RAAVLKEKRA SGGLTSAPRV IVLFPLSASV DLNSLGEDIL KLLSTDDDSG  480
VTSSSSPVAS SEYKLRATVL KAPHGDLLTC MEMAKVADLM AFVVSANSPS EENTSNYIDS  540
FGSQCLSVLR SIGLPSSTVF IRDLPSDLKK KNELKKMCAS QLASEFPEDF YVVIQGTKAY  600
CTTLAKSATI SCGSEGASLM LIFVTSDLTL REQVGMLVDD ESSGKCTLLL SGYLRARKLS  660
VNQLVHVAGV GDFQLSKVEV LQDPFPLNER KKQNSMEVDD AHDEEVLRSL LPDPMKQEPL  720
VVENTPDPLA GEQTWPTEAE MAEAEADADR NQKQGKPKKR ILPRGTSDYQ AAWIVDETDE  780
EDSDNGDSDD GMVLDRGEDH YSDQDFEDDK TLNLRDMDSE TQNESEMMDD DNLTREQYED  840
QMKKIKEEHA EDEEFPDEVE TPIDQPARKR FAKYRGLKSF RNSSWDPNES LPQDYARIFA  900
FDNVARTQKL VLKQALKMEE ESRDDCVPTG SYVRLHIKEV PLIAASKLSS LVSTKPIIGF  960
GLLQHESKMS VLHFSVKKYD GYEDPIKTKE ELMFHVGFRQ FVARPAFSTD NFSSEKHKME  1020
RFLHPGRFSL ASVYGPISFP SLPLVVLKIS EGSDAPAIAA LGSLKSIEPN KIILKKIILT  1080
GYPQRVSKMK ASVRYMFHSP EDVRWFKPVE VWSKCGRRGR VKEPVGTHGA MKCVFNGVLQ  1140
QHDVVCMNLY KRAYPKWPER IYPQLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g18_u1e-139376115711777Pre-rRNA-processing protein TSR1 homolog
6g4s_u1e-139376115711777Pre-rRNA-processing protein TSR1 homolog
6g4w_u1e-139376115711777Pre-rRNA-processing protein TSR1 homolog
6g51_u1e-139376115711777Pre-rRNA-processing protein TSR1 homolog
6g53_u1e-139376115711777Pre-rRNA-processing protein TSR1 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676782570
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3618260.0AF361826.1 Arabidopsis thaliana At1g42440/F7F22_7 mRNA, complete cds.
GenBankAY1335510.0AY133551.1 Arabidopsis thaliana At1g42440/F7F22_7 mRNA, complete cds.
GenBankBT0007550.0BT000755.1 Arabidopsis thaliana clone RAFL09-54-N01 (R19034) unknown protein (At1g42440) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024006196.10.0LOW QUALITY PROTEIN: pre-rRNA-processing protein TSR1 homolog
TrEMBLA0A1J3JM360.0A0A1J3JM36_NOCCA; Pre-rRNA-processing protein TSR1-like protein
STRINGBostr.12302s0002.1.p0.0(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49420.11e-35M-type_MADS family protein