PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676782546
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 414aa    MW: 46488.2 Da    PI: 4.9813
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676782546genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00046260282123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                y+C+ Cgk F++   L  H  +H
  676782546 260 YTCSVCGKDFPSYQALGGHKASH 282
                9***********99999998877 PP
2zf-C2H211.40.00099313335123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC++C+++F++   L  H r+H
  676782546 313 HKCSICHEVFPTGQALGGHKRRH 335
                79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.93E-8259335No hitNo description
SMARTSM003550.017260282IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.18260287IPR007087Zinc finger, C2H2
PfamPF139124.0E-12260283IPR007087Zinc finger, C2H2
PROSITE patternPS000280262282IPR007087Zinc finger, C2H2
PROSITE profilePS501578.6313335IPR007087Zinc finger, C2H2
SMARTSM003550.049313335IPR015880Zinc finger, C2H2-like
PfamPF139122.2E-11313335IPR007087Zinc finger, C2H2
PROSITE patternPS000280315335IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MDQLLYEHMM RLEPSKRDTV MKHVNRESAK RKLSRDNGDP PSKRSLEEEE EECATSAACV  60
DTRLQSCEQS IQQRSIDAED YPPPFYETAR RCILPLRQEE LKEDFKKPGT RSESSDEYSI  120
RQCSTDDDDD DDTPNSPSSS ETVEDRISKF RRQEEYEDDA VSTELKLVSN AYSIGQRSTD  180
DVNPCPYETV ESRISELRQE EVKEVNLKPW LNSSRGNDKE PSSSSPSRDD KAALILLQLS  240
SGGPTHTQSQ PQPRQKLDLY TCSVCGKDFP SYQALGGHKA SHRVKPQQLL LENGTADAVG  300
KTRPRMPPSG KLHKCSICHE VFPTGQALGG HKRRHFDGVL GGNRRSHDEE SGRDKLSPSH  360
GSIVTDMSGR NKSLMGWIDL NEDPSPEFDD NSCGRDAEEV ESAIVANKPL QLFT
Cis-element ? help Back to Top
SourceLink
PlantRegMap676782546
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018470625.16e-95PREDICTED: uncharacterized protein LOC108842259
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149691217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.26e-31zinc-finger protein 2