PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676782234

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

MYB_related

Protein Properties

Length: 1609aa MW: 182488 Da PI: 5.2028

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676782234	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.7	5.6e-08	1546	1601	1	47
TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 r+ WT+eE+e l+ +v+++ + W++I ++ ++Rt+ ++k++w++ 676782234 1546 RLFWTPEEEEMLKMGVEKFAAEakknmPWRKILEMGEkvfhETRTPADLKDKWRNM 1601 678****************9******99877***************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	2.53E-5	1216	1275	IPR011011	Zinc finger, FYVE/PHD-type
PROSITE profile	PS50090	8.037	1541	1602	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	5.1E-9	1542	1603	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.89E-9	1544	1603	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-4	1545	1604	IPR001005	SANT/Myb domain
CDD	cd11660	1.78E-11	1549	1603	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1609 aa Download sequence Send to blast
MTTCIRKGPS NSESQLQPRR TRSPLSENLS PPTTTFPRSP LSFISPHTLS PLKWSSGQSS 60 PHTLLTPTTL HHDDDDDASN KEDNDEMSIS SISDTIVGVE AGGGNELFSD YDLDDDEEDS 120 ITKVGSRYYD EEEVFGDKSS SKLNRGILKD KNLRIQVPFA NRRVTDGELR LRKFALTNST 180 PGSYLRDERP HTLSSKGSMY FDTEDPGTPS APPIMEDNGQ EHINSLEIEN EIEKIQDEIS 240 TEKNIGDIAG DVNCHLYRDA EFGESVRETQ TEEDAKIKEI SSDELNCPSI SGQYAWQSLL 300 AYDACVRLCL YAWSRGSSEA PEFLRDECRL LRGAFGLHKF LLQPRGVRST EENKNVKVEQ 360 KTPLKTKNVV RKLRVEVKRL RLIPQRKLRG IDSLRSLMNM PMGAEYCRQV SSLVKTGMSS 420 IKTATLSAVS EEQFSCYLQM KSTTEGDQVE QGYSVCLQSG TGSYHVFFPE SEGDALLIEV 480 QDKKKSVQGK VMIPMASLTD HPSAPVVETL AYDLLLEAAT RAQKFHSQNL RLNGSWKWLL 540 NEFAEYYGVS DSYTKLRYLS HVMNVAIPTK TCLQLVHELL VPILSARSER SLTRQEKSIL 600 MDCEIEIEKL LANVFENYKS LDENYPSGLA DISDPVQESA SPALSPAVQI FSLLHDILTP 660 EGQEILKNYL QTAAKKRCRK HMAETDEYIS SNSEGFLLDS VTISTAYHKM KNLCLNISNE 720 IETDIKITNE HVLPSSIDLS NIAAAVYSTQ LCNRLRAFLS AVPPSCPMPH VNELLIAVSD 780 FERNLDIWGI SPVQGGIESR GLFHNYIMVW IHDMELRLLD RCRAEKVPWS GVITNHSTSP 840 FAEDMYERIK DSLIEYEVVI SRWPQYTLIL ENTASIVERA IVKSLEKQYS DVLTPLKDSI 900 PKRLNIHVQK LTRRQSSALY SVPTQLGTFV NTIKRILDVL HHRVEDILRQ WASCLPVVED 960 KKSLFGEQMN VITVLLRTKY RNYMQAAVDK LVSNTQTNKS TRLKRILEEI KENEREVEVR 1020 ERMKMLCSQI TDSISNLHDV FTSQIFVASC RLFWDRMAQV VLKFLEGRKE NEVGYKGSYY 1080 ALGIVEDTFA SEMQRLQGNS LQEKDMEAPR SVIEAREVEA RLQQKKIEMR SKSFPVRSLP 1140 HRASRMSLDP YPSPASLPGE ANERIASGAS TRRCGNGDAD DETVPDTFDE RDMPHKKRHC 1200 LGKSEASKGV SEQLSLDACI VCDKSDERVS RCSGIDCLLS FHGECLNPES GSNEEDLANS 1260 YCPYCWFRIL TLKHKSAREK AVEAEKAVFE YLEKEMNSRD EVEESVPKSQ EDKALDADET 1320 GNQDHSVDRT DVVSDQELRG DKDGCLSEME QLQVEKDSGK SRQEGMPLIE ETDCQPEVDT 1380 EKLEVSDKSG DMKDDKVIDE VEASEDRRID TEKFEDAEED KDDETAKDQT KVNTGAGEKG 1440 DVSPFLSMQE SFSGKERDQI PQSENRRRRR RRLILKDIDS DISSNESTNE RNGEEVTEQI 1500 TSSTQVVTSP SGRIKKQQRK HSATRKVAMS KTVRDVSFFK GDQRRRLFWT PEEEEMLKMG 1560 VEKFAAEAKK NMPWRKILEM GEKVFHETRT PADLKDKWRN MIRLGKKTN

Sequence ? help Back to Top

Protein Sequence Length: 1609 aa Download sequence Send to blast

MTTCIRKGPS NSESQLQPRR TRSPLSENLS PPTTTFPRSP LSFISPHTLS PLKWSSGQSS  60
PHTLLTPTTL HHDDDDDASN KEDNDEMSIS SISDTIVGVE AGGGNELFSD YDLDDDEEDS  120
ITKVGSRYYD EEEVFGDKSS SKLNRGILKD KNLRIQVPFA NRRVTDGELR LRKFALTNST  180
PGSYLRDERP HTLSSKGSMY FDTEDPGTPS APPIMEDNGQ EHINSLEIEN EIEKIQDEIS  240
TEKNIGDIAG DVNCHLYRDA EFGESVRETQ TEEDAKIKEI SSDELNCPSI SGQYAWQSLL  300
AYDACVRLCL YAWSRGSSEA PEFLRDECRL LRGAFGLHKF LLQPRGVRST EENKNVKVEQ  360
KTPLKTKNVV RKLRVEVKRL RLIPQRKLRG IDSLRSLMNM PMGAEYCRQV SSLVKTGMSS  420
IKTATLSAVS EEQFSCYLQM KSTTEGDQVE QGYSVCLQSG TGSYHVFFPE SEGDALLIEV  480
QDKKKSVQGK VMIPMASLTD HPSAPVVETL AYDLLLEAAT RAQKFHSQNL RLNGSWKWLL  540
NEFAEYYGVS DSYTKLRYLS HVMNVAIPTK TCLQLVHELL VPILSARSER SLTRQEKSIL  600
MDCEIEIEKL LANVFENYKS LDENYPSGLA DISDPVQESA SPALSPAVQI FSLLHDILTP  660
EGQEILKNYL QTAAKKRCRK HMAETDEYIS SNSEGFLLDS VTISTAYHKM KNLCLNISNE  720
IETDIKITNE HVLPSSIDLS NIAAAVYSTQ LCNRLRAFLS AVPPSCPMPH VNELLIAVSD  780
FERNLDIWGI SPVQGGIESR GLFHNYIMVW IHDMELRLLD RCRAEKVPWS GVITNHSTSP  840
FAEDMYERIK DSLIEYEVVI SRWPQYTLIL ENTASIVERA IVKSLEKQYS DVLTPLKDSI  900
PKRLNIHVQK LTRRQSSALY SVPTQLGTFV NTIKRILDVL HHRVEDILRQ WASCLPVVED  960
KKSLFGEQMN VITVLLRTKY RNYMQAAVDK LVSNTQTNKS TRLKRILEEI KENEREVEVR  1020
ERMKMLCSQI TDSISNLHDV FTSQIFVASC RLFWDRMAQV VLKFLEGRKE NEVGYKGSYY  1080
ALGIVEDTFA SEMQRLQGNS LQEKDMEAPR SVIEAREVEA RLQQKKIEMR SKSFPVRSLP  1140
HRASRMSLDP YPSPASLPGE ANERIASGAS TRRCGNGDAD DETVPDTFDE RDMPHKKRHC  1200
LGKSEASKGV SEQLSLDACI VCDKSDERVS RCSGIDCLLS FHGECLNPES GSNEEDLANS  1260
YCPYCWFRIL TLKHKSAREK AVEAEKAVFE YLEKEMNSRD EVEESVPKSQ EDKALDADET  1320
GNQDHSVDRT DVVSDQELRG DKDGCLSEME QLQVEKDSGK SRQEGMPLIE ETDCQPEVDT  1380
EKLEVSDKSG DMKDDKVIDE VEASEDRRID TEKFEDAEED KDDETAKDQT KVNTGAGEKG  1440
DVSPFLSMQE SFSGKERDQI PQSENRRRRR RRLILKDIDS DISSNESTNE RNGEEVTEQI  1500
TSSTQVVTSP SGRIKKQQRK HSATRKVAMS KTVRDVSFFK GDQRRRLFWT PEEEEMLKMG  1560
VEKFAAEAKK NMPWRKILEM GEKVFHETRT PADLKDKWRN MIRLGKKTN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1465	1471	RRRRRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676782234

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP000372	1e-101	AP000372.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K23F3.
GenBank	CP002688	1e-101	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013644289.1	0.0	uncharacterized protein BNAC07G26400D
TrEMBL	A0A3P6E469	0.0	A0A3P6E469_BRAOL; Uncharacterized protein (Fragment)
STRING	Bra037494.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM810	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58340.2	3e-06	MYB_related family protein