PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676781952
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bZIP
Protein Properties Length: 318aa    MW: 34772.8 Da    PI: 8.6878
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676781952genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.22.3e-15159210455
                XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                +kr +r+ +NRe+ArrsR+RK+a + eLe+ v +L  eN++L k l   +++
  676781952 159 VKRVKRMLSNRESARRSRRRKQAHLSELETQVSQLRVENSKLMKGLTDVTQT 210
                69****************************************9988777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.5E-17156220IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.818158221IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.1E-11159210No hitNo description
PfamPF001703.1E-13159207IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.99E-12160209No hitNo description
PROSITE patternPS000360163178IPR004827Basic-leucine zipper domain
PfamPF124982.9E-14227276IPR020983Basic leucine-zipper, C-terminal
PfamPF124982.1E-5289313IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEKVFSVEEI SGNHLWSELA KDTTDGGTTA MNRSDSEWAF HRFLQESSAS ASAGEDATAY  60
GPPPPNVPVD SDEYREFLKN KLNLACAAVA MKRGAFIKPQ ETSARSDNGG AYTSSASEQG  120
SLASSKATPV MSSAISSGSE LSGDEEEADG ETNMNPTHVK RVKRMLSNRE SARRSRRRKQ  180
AHLSELETQV SQLRVENSKL MKGLTDVTQT FNDASVENRV LKANIETLRA KVKMAEETVK  240
RITGFNPLFH TMPQISTASL PSEKSNPQET STQVTTPEIS SGNKGKALLG CKMNRTDSMR  300
RVASLEHLQK RIRSVGDQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172179RRSRRRKQ
2174179SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in controlling responses to starvation (PubMed:26263501). BZIP2-BZIP63-KIN10 complex binds to the ETFQO promoter to up-regulate its transcription (PubMed:29348240). {ECO:0000269|PubMed:26263501, ECO:0000269|PubMed:29348240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676781952
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly repressed by glucose. {ECO:0000269|PubMed:18841482}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532650.0AK353265.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-D15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395031.10.0basic leucine zipper 63
SwissprotB9DGI81e-175BZP63_ARATH; Basic leucine zipper 63
TrEMBLA0A1J3IM170.0A0A1J3IM17_NOCCA; Basic leucine zipper 63
STRINGXP_006395031.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68462743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.21e-150bZIP family protein
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]
  2. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Mair A, et al.
    SnRK1-triggered switch of bZIP63 dimerization mediates the low-energy response in plants.
    Elife, 2016.
    [PMID:26263501]
  5. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]