PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

FAR1

Protein Properties

Length: 689aa MW: 78970.7 Da PI: 6.5043

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676781928	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.8	3.7e-23	74	166	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek....dgkwevtkleleHnHela 90 ++Y+++A++ GFs+rk++s++s++ g +++r+fvC+++g+++++kk ++++ r+r++ r+gC+akl ++k+ +w v+++++ HnHel 676781928 74 EYYSSFARKSGFSIRKARSTESHNLG-VYRRDFVCYRSGFNQPRKKPNVDHPRERKSVRCGCDAKLYLTKQLldggLTHWFVSQFSNVHNHELL 166 69******************7777.***************************************987555579***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.2E-21	74	166	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.4E-22	298	391	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.359	557	605	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	7.7E-7	571	604	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.0E-5	580	607	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 689 aa Download sequence Send to blast
MGSKTLNNIW IRRQQCPCGD WKCYIRIEGD ENHQVTTTKS EIDTSASSSS SAYETTVFMP 60 YVGQIFRSDE EAFEYYSSFA RKSGFSIRKA RSTESHNLGV YRRDFVCYRS GFNQPRKKPN 120 VDHPRERKSV RCGCDAKLYL TKQLLDGGLT HWFVSQFSNV HNHELLEDDQ VRLLPAYRKI 180 HQPDQERILL LSKAGFPVNR IVKLLELEKG VLPGHLPFIE KDVRNFVRAC KKTVQENDAF 240 LNEKRDADFL ELLDSCKALA ERDMDFAYDY TSDESHKVEN LAWAYSDSVQ AYSVFGDVVV 300 FDTTYRSITY GLLLGVFFGI DNNGNAILLG CVLLQDESCR SFTWALQTFV RFMRGRHPQT 360 IVTDIDTGIK DAVARELPNT SHVVLMWHVV SKLASWFSQT LGSHYDEFRA GFEMLCRGGN 420 VDEFEQQWDL LITRFGLVPD RHAALLYSFR ATWSPCYTRQ HFLAQTMTAE FSLSIDSFLK 480 RIVAGSACMQ LLLEEINAAA SLAKQISPRV PFPTLKTCMP MEDHARAVLT PYAFSVLQNE 540 MVLSVQYAVA EMANGPYIVH HFKKMEGECC VFWNPENEEI HCSCKEFEHS GILCRHSLRV 600 LTVKNRFHIP EQYFLVRWRQ ESPLVTAENQ NGIGIGDDSA QTFHSLTETL LTESMISKDR 660 LDYTNQELSA LIDRVRNIEP PNTCISHDC

Sequence ? help Back to Top

Protein Sequence Length: 689 aa Download sequence Send to blast

MGSKTLNNIW IRRQQCPCGD WKCYIRIEGD ENHQVTTTKS EIDTSASSSS SAYETTVFMP  60
YVGQIFRSDE EAFEYYSSFA RKSGFSIRKA RSTESHNLGV YRRDFVCYRS GFNQPRKKPN  120
VDHPRERKSV RCGCDAKLYL TKQLLDGGLT HWFVSQFSNV HNHELLEDDQ VRLLPAYRKI  180
HQPDQERILL LSKAGFPVNR IVKLLELEKG VLPGHLPFIE KDVRNFVRAC KKTVQENDAF  240
LNEKRDADFL ELLDSCKALA ERDMDFAYDY TSDESHKVEN LAWAYSDSVQ AYSVFGDVVV  300
FDTTYRSITY GLLLGVFFGI DNNGNAILLG CVLLQDESCR SFTWALQTFV RFMRGRHPQT  360
IVTDIDTGIK DAVARELPNT SHVVLMWHVV SKLASWFSQT LGSHYDEFRA GFEMLCRGGN  420
VDEFEQQWDL LITRFGLVPD RHAALLYSFR ATWSPCYTRQ HFLAQTMTAE FSLSIDSFLK  480
RIVAGSACMQ LLLEEINAAA SLAKQISPRV PFPTLKTCMP MEDHARAVLT PYAFSVLQNE  540
MVLSVQYAVA EMANGPYIVH HFKKMEGECC VFWNPENEEI HCSCKEFEHS GILCRHSLRV  600
LTVKNRFHIP EQYFLVRWRQ ESPLVTAENQ NGIGIGDDSA QTFHSLTETL LTESMISKDR  660
LDYTNQELSA LIDRVRNIEP PNTCISHDC

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676781928

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP002688	1e-178	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBank	T26D3	1e-178	AF262043.1 Arabidopsis thaliana BAC T26D3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024007204.1	0.0	putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	V4MLI2	0.0	V4MLI2_EUTSA; Uncharacterized protein
STRING	XP_006395020.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1765	26	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]