 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
676781130 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 259aa MW: 29759.3 Da PI: 9.5834 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 676781130 | genome | VEGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 51.1 | 2.3e-16 | 116 | 161 | 11 | 56 |
HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
q+ +Le+ Fe+++++ e++ LAkklgL++rqV vWFqNr+a+ k
676781130 116 QVSQLETSFEEENKLEPERKIVLAKKLGLPQRQVAVWFQNRKARCK 161
899*****************************************98 PP
|
| 2 | HD-ZIP_I/II | 105.2 | 5.2e-34 | 116 | 197 | 10 | 91 |
HD-ZIP_I/II 10 qvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
qv++LE+sFeee+kLeperK la++Lgl +rqvavWFqnr+AR k k++E+dy+ Lk++yd+l +++e++ +e+e+L++++
676781130 116 QVSQLETSFEEENKLEPERKIVLAKKLGLPQRQVAVWFQNRKARCKIKKIERDYDILKACYDSLLAKHESVISENEKLKSKV 197
99*****************************************************************************987 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 259 aa
Download sequence Send
to blast |
MADIPPLDLV DIRIEPSLIQ KSNNPAQFNP SPTSVFYFLS PYANQPPITI KKASHKKTTS 60
PFEVLVLSFQ GAKLAMEMKE TSTGEIDNQP PEKKRRLTIE QVKYIYKEIQ RSLLLQVSQL 120
ETSFEEENKL EPERKIVLAK KLGLPQRQVA VWFQNRKARC KIKKIERDYD ILKACYDSLL 180
AKHESVISEN EKLKSKVLTL TEKLLPATNQ THRIFQDKLN SKGDETMSSS TALVPLANDD 240
YLTNIDQSFG WWVWPPNLK
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC232548 | 1e-91 | AC232548.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH010J09, complete sequence. |
