PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676780946
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 412aa    MW: 47176 Da    PI: 4.9386
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676780946genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.63.4e-16441161894
                --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                +p ++ +e  ++   +kt +l+ + g  W+v++  ++k++++++++GW +Fv +n L +gDf++F ++g++ fe  +
  676780946  44 IPISYYDELPSI--FPKTAVLQGTGGCFWKVEM--KRKRDEVYFGQGWTKFVTDNSLSDGDFLTFVYNGDRIFEVSI 116
                555665555444..7889***************..********************************9998885554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.2E-1013120IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-1842122IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.1E-1743121IPR015300DNA-binding pseudobarrel domain
CDDcd100171.08E-1344117No hitNo description
PROSITE profilePS5086312.97144120IPR003340B3 DNA binding domain
PfamPF023626.9E-1344115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.4E-6310407IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.49E-6310402IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.38316410IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MEKPNLLFVD SLCCNERFSS ELDFKVSVSC VVAYLLNACL DQLIPISYYD ELPSIFPKTA  60
VLQGTGGCFW KVEMKRKRDE VYFGQGWTKF VTDNSLSDGD FLTFVYNGDR IFEVSIYGLD  120
ACKETRAVTQ VDDVEEDSIW SVSSKETDTC SEPEMATTIL SSKENKGKSK VEHVDESDEE  180
EESVYTDTDA NTCSELKVAK TVPRSINKGK KIVVESSNED SDSDYIEAFD RLDVEENSNS  240
DSSYAPDCEE ATTTGSVKRK VKNSKKKGKS ESKEDVDETS ETSYAVELPK QKRERVTSKK  300
IKDPEKYLDD PKNVYFETNV KNRNFELLVS AQLVKDYCLK FQDSVYYIDN HRDGKLQAKT  360
ANWKDQRVCI KRWTRICKRN QLKKGDGILC ELLRKRSLVY AIRIHIIREK DI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A1e-144412226104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676780946
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024005760.11e-149B3 domain-containing protein At4g34400
SwissprotQ9SZ051e-111Y3440_ARATH; B3 domain-containing protein At4g34400
TrEMBLV4LDS21e-137V4LDS2_EUTSA; Uncharacterized protein
STRINGXP_006396490.11e-138(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65551641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.11e-107B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Richter R, et al.
    Floral regulators FLC and SOC1 directly regulate expression of the B3-type transcription factor TARGET OF FLC AND SVP 1 at the Arabidopsis shoot apex via antagonistic chromatin modifications.
    PLoS Genet., 2019. 15(4): p. e1008065
    [PMID:30946745]