PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676780838
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HD-ZIP
Protein Properties Length: 855aa    MW: 94580.3 Da    PI: 6.2123
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676780838genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.5e-183896357
               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
               k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  676780838 38 KYVRYTPEQVEALERLYNDCPKPSSMRRQQLIRECpilsNIEAKQIKVWFQNRRCREKQ 96
               5679*****************************************************97 PP
2START191.73.6e-601823902205
                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS
      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 
                +a e+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W +++++ ++++v+s++  g+l+l++++l+
  676780838 182 IADETLTEFISKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGIAARACGLVGLDPT-RVAEILKDRPSWLRDCRSLDIVNVLSTAngGTLELIYMQLY 280
                68899*****************************************************.8888888888*****************999*********** PP

                TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHH CS
      START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegakt 195
                a+++l+p Rdf+++Ry+  +++g++vi+++S++++q+ p+   s+++vRae lpSg+li+p+++g+s +++v+h+dl+ ++++++lrsl++s++  +++t
  676780838 281 APTTLAPaRDFWMLRYTSVMEDGSLVICERSLNNTQNGPSmppSPHFVRAEILPSGYLIRPCEGGGSILHIVDHFDLEPWSVPEVLRSLYESSTLLAQRT 380
                **************************************99999********************************************************* PP

                HHHHTXXXXX CS
      START 196 wvatlqrqce 205
                ++a+l+++++
  676780838 381 TMAALRYLRQ 390
                *****99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.3373397IPR001356Homeobox domain
SMARTSM003899.1E-1535101IPR001356Homeobox domain
CDDcd000868.93E-163898No hitNo description
SuperFamilySSF466893.29E-1638101IPR009057Homeodomain-like
PfamPF000464.0E-163996IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-174096IPR009057Homeodomain-like
CDDcd146861.17E-690129No hitNo description
PROSITE profilePS5084827.25172400IPR002913START domain
CDDcd088752.65E-81176391No hitNo description
Gene3DG3DSA:3.30.530.206.6E-25180386IPR023393START-like domain
SMARTSM002343.3E-43181391IPR002913START domain
SuperFamilySSF559613.71E-38181392No hitNo description
PfamPF018529.4E-58182390IPR002913START domain
PfamPF086701.5E-47714854IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010067Biological Processprocambium histogenesis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0010089Biological Processxylem development
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 855 aa     Download sequence    Send to blast
MFMLQEYAFF CSKGITREIE RGSKMGGSNN SHNIDNGKYV RYTPEQVEAL ERLYNDCPKP  60
SSMRRQQLIR ECPILSNIEA KQIKVWFQNR RCREKQRKEA SRLQAVNRKL TAMNKLLMEE  120
NDRLQKQVSH LVYENSYFRQ HPQNGNLATT DTSCESVVTS GQHQLTPQHQ PRDASPAGLL  180
SIADETLTEF ISKATGTAVE WVQMPGMKPG PDSIGIVAIS HGCTGIAARA CGLVGLDPTR  240
VAEILKDRPS WLRDCRSLDI VNVLSTANGG TLELIYMQLY APTTLAPARD FWMLRYTSVM  300
EDGSLVICER SLNNTQNGPS MPPSPHFVRA EILPSGYLIR PCEGGGSILH IVDHFDLEPW  360
SVPEVLRSLY ESSTLLAQRT TMAALRYLRQ ISQEISQPNV TGWGRRPAAL RALSQRLSKG  420
FNEAVNGFSD EGWSMLESDG IDDVTLLVNS SPTKMMMTSS LPFSNGFTSM PSAVLCAKAS  480
MLLQNVPPSI LLRFLREHRQ EWADNSIDAY SAAAIKAGPC SLPIPRPGSF GGQVILPLAH  540
TIENEEFMEV IKLESLGHYQ EDMMMPADIF LLQMCSGVDE NAVESCAELI FAPIDASFSD  600
DAPIIPSGFR IIPLDSKSEG LSPNRTLDLA SALDVGSRTA GDSGGSRGNT KSVMTIAFQL  660
AFEMHMQENV ASMARQYVRS VIASVQRVAL ALSPSSHQLS GGLRPPPASP EAHTLARWIS  720
HSYRCYLGVE LLKPNGTDLL KSLWHHPDAL MCCSLKALPP VFTFANQAGL DMLETTLVAL  780
QDITLEKIFD NNGKKTLCSD FPQIMQQGFM CIDGGICMSS MGRAVTYEKA VAWKVLNDDE  840
DPHCICFMFL NWSFI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676780838
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0996310.0AY099631.1 Arabidopsis thaliana HD-zip transcription factor (athb-8) (At4g32880) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412418.10.0homeobox-leucine zipper protein ATHB-8 isoform X2
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLV4P3880.0V4P388_EUTSA; Uncharacterized protein
STRINGXP_006412419.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20222678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  5. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  6. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  8. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]