PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676780814
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family TALE
Protein Properties Length: 481aa    MW: 54519.2 Da    PI: 6.2677
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676780814genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.83.7e-083984361854
                HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                +F++  ++yp+ +e+  LA + gLt +qV++WF N R +
  676780814 398 MFQNflHPYPKDSEKHLLALRSGLTRSQVSNWFINARVR 436
                5887779******************************88 PP
2BELL87.31.6e-28273343172
       BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                +r++l++ k++Ll+ll++Vd+rY+++v++++tv+s+F+a+++l++ +++t++Al++iS+ +++L+++i+ +i
  676780814 273 QRRALEATKTHLLDLLQMVDDRYSHCVDEIHTVVSAFHAATELDP-QLHTRFALQTISFLYKNLRERISRKI 343
                68999****************************************.***********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005749.7E-52194341IPR006563POX domain
PfamPF075261.5E-26199340IPR006563POX domain
PROSITE profilePS5007111.029377440IPR001356Homeobox domain
SMARTSM003891.6E-4380444IPR001356Homeobox domain
CDDcd000867.01E-10380441No hitNo description
SuperFamilySSF466896.42E-15381449IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-25383446IPR009057Homeodomain-like
PfamPF059202.2E-14397436IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MENDSTFTSL DNVMTNQNSL HMDFIPLRED STSFSTMLPW NSIRQDSLQM GGIDIFNSFL  60
TNTYLSSTSR SINVQETRNI ESFEVMAPPP PPLHHLDLLR PYDDSSNNMW SIGENSEFHA  120
YPCVEGGVGP SEPIMSTLGE EDFPFLVSNK RNELSLSLAT DVSDECSEIS LCAATKSTRI  180
TSEQASSSSK DMSNNVSQVI FGSKYLHSVQ EILSHFAAYS LDGLDNDPQC YFSSRGTESG  240
GATSAFNSCF ENLNEFLDGG LNNSEAGLGS TSQRRALEAT KTHLLDLLQM VDDRYSHCVD  300
EIHTVVSAFH AATELDPQLH TRFALQTISF LYKNLRERIS RKILMMGSVL ERGKEKSQEN  360
SIFHQHCILQ QLKRKNHQIW RPQRGLPEKS VSVLRTWMFQ NFLHPYPKDS EKHLLALRSG  420
LTRSQVSNWF INARVRLWKP MIEEMYAEMN KRKQNNIHLQ GGNGGSLRMK KSTMMSQERD  480
I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-14386444563Homeobox protein Meis2
3k2a_B4e-14386444563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676780814
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412405.10.0homeobox protein ATH1
SwissprotP487310.0ATH1_ARATH; Homeobox protein ATH1
TrEMBLV4MM230.0V4MM23_EUTSA; Uncharacterized protein
STRINGXP_006412405.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82282637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.10.0homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]