PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676780060
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family WRKY
Protein Properties Length: 593aa    MW: 65591 Da    PI: 7.294
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676780060genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.55.1e-32231288260
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  676780060 231 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 288
                8****************************************.***************85 PP
2WRKY1079.2e-34402460159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+v+g+++prsYY+Ct +gCpv+k+ver+++dpk+v++tYeg+Hnh+
  676780060 402 LDDGYRWRKYGQKVVRGNPNPRSYYKCTAPGCPVRKHVERASHDPKAVITTYEGKHNHD 460
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-27224289IPR003657WRKY domain
PROSITE profilePS5081123.766225289IPR003657WRKY domain
SuperFamilySSF1182903.53E-25227289IPR003657WRKY domain
SMARTSM007743.5E-34230288IPR003657WRKY domain
PfamPF031061.8E-24231287IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-37387462IPR003657WRKY domain
SuperFamilySSF1182901.83E-29394462IPR003657WRKY domain
PROSITE profilePS5081138.629397462IPR003657WRKY domain
SMARTSM007743.1E-39402461IPR003657WRKY domain
PfamPF031064.9E-26403460IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MDPNRNEFRV DCSESRRDSP DCSAGGGARY KLMSPAKLPI SRSTCITIPP GLSPTSFLES  60
PVLLSNIKVS DLVTIQFHGS TVLSESDLIL EPTAEPSPTT GSLFKPQAVH ANSTSYTART  120
TPHQNTLDDQ KSTEFEFRPP ASSMLSKRRF VDFKFYAELD KHRSEAPLQF QTQGHSFKHS  180
PSSASSSEIS RQTVVPHQTT PSASERSDPD ESSVQTSQND SRASAPAVLA DDGYNWRKYG  240
QKHVKGSEFP RSYYKCTHPN CEVKKLFERS HDGQITEIIY KGTHDHPKPQ PSRRNSGGLV  300
MPPQEERPDK YSSFNGRDEK GASLYNLSPP VAQNGNPDVS PVSANDDGGD VAMSNRNNDD  360
VDDNDPFSKR RRLDGAMEIT PLVKPIREPR VVVQTLSEVD ILDDGYRWRK YGQKVVRGNP  420
NPRSYYKCTA PGCPVRKHVE RASHDPKAVI TTYEGKHNHD VPTARSNNNS NNNHELSAPR  480
FRPEETTDTV SLDLGVGIAS GGPDHTSNEH PHQQQQQQLH IRSELVHQAQ NNGAAGFRFV  540
HGPPMGSYYA NSLNAGVNHQ YNGSRETANE AQTGDISSSY PYPHNIGRIQ SGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-38229462877Probable WRKY transcription factor 4
2lex_A8e-38229462877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1368372KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676780060
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401438.10.0probable WRKY transcription factor 20
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A087GB880.0A0A087GB88_ARAAL; Uncharacterized protein
STRINGA0A087GB880.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein