PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676779376
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bZIP
Protein Properties Length: 291aa    MW: 31900.2 Da    PI: 5.9821
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676779376genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_156.56e-18134187356
                XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                +lkr +r+++NRe+ArrsR+RK++ ++ Le  v++L++eN++L k+l   +++ 
  676779376 134 DLKRIKRMYSNRESARRSRRRKQEHLADLESQVDSLKGENSTLYKQLVAATQQF 187
                79*****************************************99987766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.4E-13130188No hitNo description
SMARTSM003381.7E-15132196IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.001134180IPR004827Basic-leucine zipper domain
PfamPF001708.4E-15134181IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.5E-12136186No hitNo description
PROSITE patternPS000360139154IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MDTNTAKDIG MKRSASELAL QEYITKFSSA LSRQESILDT SPLDPSFDLI NRDYIGELRD  60
SHLLSESLTP AGLFLDAQSS ICENLSADSP VSANKPEARR GARRTASVSS HDHSDEEDAE  120
TEAGQSELTN DPNDLKRIKR MYSNRESARR SRRRKQEHLA DLESQVDSLK GENSTLYKQL  180
VAATQQFRSA GTNNRVLKSD VETLRIKVKL AEDWVARGSL TSGLNQLLQT HLRPPPQSIN  240
SLNYTGNTSP AITVHSDQSL FPGVTLSGQN SSPGLGNVSS EAVSCVSNIW P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148155RRSRRRKQ
2150155SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676779376
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by glucose. {ECO:0000269|PubMed:18841482}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3102230.0AF310223.1 Arabidopsis thaliana bZIP protein BZO2H2 mRNA, complete cds.
GenBankAK2268730.0AK226873.1 Arabidopsis thaliana mRNA for bZIP protein BZO2H2, clone: RAFL09-07-B02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013700428.11e-176basic leucine zipper 9-like
RefseqXP_018439024.11e-176PREDICTED: LOW QUALITY PROTEIN: basic leucine zipper 9-like
SwissprotQ9FUD31e-167BZIP9_ARATH; Basic leucine zipper 9
TrEMBLA0A1J3CTX61e-177A0A1J3CTX6_NOCCA; Basic leucine zipper 9
TrEMBLA0A1J3FKF51e-177A0A1J3FKF5_NOCCA; Basic leucine zipper 9
STRINGBra020471.1-P1e-174(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63702641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.11e-148basic leucine zipper 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ortiz-Espín A, et al.
    Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions.
    J. Exp. Bot., 2017. 68(5): p. 1025-1038
    [PMID:28184497]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]