PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676778890

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

HD-ZIP

Protein Properties

Length: 949aa MW: 106093 Da PI: 7.0114

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676778890	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.2	9e-21	109	164	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e+lF++n++p+ ++r++L+++lgL+ rqVk+WFqNrR+++k 676778890 109 KKRYHRHTNRQIQEMEALFKENPHPDDKQRQRLSHELGLKPRQVKFWFQNRRTQMK 164 688999***********************************************998 PP
2	START	139.6	3.2e-44	318	550	2	206
HHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS START 2 laeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetla....k 78 +a ++ qel k+ eep+W k +n++e+++ f ++ ea++a +vv+m++ +lv +l+ +W+e++ + 676778890 318 FAVSCVQELTKMCNTEEPLWIKKKsdktggefLCLNEEEYRRLF----PwpmenqnnkgdFRREASKANAVVIMNSITLVDAFLNAD-KWSEMFCsivaR 412 678999*************99966665555445666666655....0444566789999**********************.***99999 PP EEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS START 79 aetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwve 168 a+t++ issg g l lm+aelq+lsplvp R+ +f+Ry +q + g w+ivd +ds ++ + + ++ pSg++i++++ng+s+v wve 676778890 413 AKTVQIISSGvsgasGSLLLMYAELQVLSPLVPtREAYFLRYVEQnAENGNWAIVDFPIDSFHDQIQplsTNTPCEYKRKPSGCIIQDMPNGYSQVKWVE 512 *******************************************99********97555443435555555689***************** PP -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 hv++++r+ h+++ vksg+a+ga++w+ l+rqce+ 676778890 513 HVEVDERHMHEIFAEYVKSGMAFGANRWLDVLERQCER 550 **********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.6E-20	99	167	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.4E-21	103	172	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.767	106	166	IPR001356	Homeobox domain
SMART	SM00389	6.4E-19	107	170	IPR001356	Homeobox domain
Pfam	PF00046	2.8E-18	109	164	IPR001356	Homeobox domain
CDD	cd00086	1.29E-18	109	167	No hit	No description
PROSITE pattern	PS00027	0	141	164	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	42.932	308	553	IPR002913	START domain
SuperFamily	SSF55961	2.61E-30	309	550	No hit	No description
CDD	cd08875	1.84E-102	312	549	No hit	No description
SMART	SM00234	1.7E-26	317	550	IPR002913	START domain
Pfam	PF01852	2.0E-36	318	550	IPR002913	START domain
SuperFamily	SSF55961	1.03E-12	565	790	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048497	Biological Process	maintenance of floral organ identity
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 949 aa Download sequence Send to blast
MGEGNVMTTD HRFASPPPSS SSPATIQNPN FNFIPFNSFS SIIPKEEHGM MSMSMMMMMG 60 DGGVEEMMEN GSAGGSFGSG SEQAEDPKSG NEFDVNELQD EEQPPPAKKK RYHRHTNRQI 120 QEMEALFKEN PHPDDKQRQR LSHELGLKPR QVKFWFQNRR TQMKAQQDRA ENVMLRAEND 180 SLKSENSHLQ AELRCLSCPS CGGPTVLGDI PFNELHIENC RLREELDRLC CIASRYTGRP 240 MQSSQPLINP PPELPHHQPS LELDMSAYAG NFPEHPCSDL MLLPPQDTAC FFPDQTNNNS 300 NNNNMLLADE EKVMAMEFAV SCVQELTKMC NTEEPLWIKK KSDKTGGEFL CLNEEEYRRL 360 FPWPMENQNN KGDFRREASK ANAVVIMNSI TLVDAFLNAD KWSEMFCSIV ARAKTVQIIS 420 SGVSGASGSL LLMYAELQVL SPLVPTREAY FLRYVEQNAE NGNWAIVDFP IDSFHDQIQP 480 LSTNTPCEYK RKPSGCIIQD MPNGYSQVKW VEHVEVDERH MHEIFAEYVK SGMAFGANRW 540 LDVLERQCER VAMIRSAEGR RNMMKLSQRM MKTFCVNIST SYGQSWTALS ETTKDTVRIT 600 TRKVCEPGQP TGVVLAAVST TWLPFSHVKV FDLLRHQHHH SLLEVLFNGN SPHEVAHIAN 660 GSHPGNCISL LRINVASNSW HNVELMLQES CIDNSGSLIV YSSVDVDSIQ HAMNGEDPSG 720 IPLLPLGFSV VPVNSPDQVE GVSVISNPPL SCLLTVGIQV LASNVPTAKP NLSTVTTINN 780 HLCSIVNQIT SVLGSTISSS AVGDDAVAKQ EVQNGNLGVK RGRFRGNTVV LALRVFWFYV 840 FGRVKMVFKT EEVKSAPGGI TRNEMGTLSL TPRMLAFKAV QRQTAASRST RPLIRAQHSD 900 FSGRKTLTKS NTFAHTLRLR VPQSRLGTAV ELTKVKNMTL KMRRRAILE

Sequence ? help Back to Top

Protein Sequence Length: 949 aa Download sequence Send to blast

MGEGNVMTTD HRFASPPPSS SSPATIQNPN FNFIPFNSFS SIIPKEEHGM MSMSMMMMMG  60
DGGVEEMMEN GSAGGSFGSG SEQAEDPKSG NEFDVNELQD EEQPPPAKKK RYHRHTNRQI  120
QEMEALFKEN PHPDDKQRQR LSHELGLKPR QVKFWFQNRR TQMKAQQDRA ENVMLRAEND  180
SLKSENSHLQ AELRCLSCPS CGGPTVLGDI PFNELHIENC RLREELDRLC CIASRYTGRP  240
MQSSQPLINP PPELPHHQPS LELDMSAYAG NFPEHPCSDL MLLPPQDTAC FFPDQTNNNS  300
NNNNMLLADE EKVMAMEFAV SCVQELTKMC NTEEPLWIKK KSDKTGGEFL CLNEEEYRRL  360
FPWPMENQNN KGDFRREASK ANAVVIMNSI TLVDAFLNAD KWSEMFCSIV ARAKTVQIIS  420
SGVSGASGSL LLMYAELQVL SPLVPTREAY FLRYVEQNAE NGNWAIVDFP IDSFHDQIQP  480
LSTNTPCEYK RKPSGCIIQD MPNGYSQVKW VEHVEVDERH MHEIFAEYVK SGMAFGANRW  540
LDVLERQCER VAMIRSAEGR RNMMKLSQRM MKTFCVNIST SYGQSWTALS ETTKDTVRIT  600
TRKVCEPGQP TGVVLAAVST TWLPFSHVKV FDLLRHQHHH SLLEVLFNGN SPHEVAHIAN  660
GSHPGNCISL LRINVASNSW HNVELMLQES CIDNSGSLIV YSSVDVDSIQ HAMNGEDPSG  720
IPLLPLGFSV VPVNSPDQVE GVSVISNPPL SCLLTVGIQV LASNVPTAKP NLSTVTTINN  780
HLCSIVNQIT SVLGSTISSS AVGDDAVAKQ EVQNGNLGVK RGRFRGNTVV LALRVFWFYV  840
FGRVKMVFKT EEVKSAPGGI TRNEMGTLSL TPRMLAFKAV QRQTAASRST RPLIRAQHSD  900
FSGRKTLTKS NTFAHTLRLR VPQSRLGTAV ELTKVKNMTL KMRRRAILE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676778890

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189245	0.0	AC189245.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB017K02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006398384.1	0.0	homeobox-leucine zipper protein HDG5 isoform X1
Refseq	XP_024011151.1	0.0	homeobox-leucine zipper protein HDG5 isoform X1
Swissprot	Q9FJS2	0.0	HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBL	V4LBR7	0.0	V4LBR7_EUTSA; Uncharacterized protein
STRING	XP_006398384.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4356	25	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46880.1	0.0	homeobox-7

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Lung SC, et al. Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors. New Phytol., 2018. 218(1): p. 183-200 [PMID:29288621]