 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
676778872 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
|
| Family |
bHLH |
| Protein Properties |
Length: 496aa MW: 55347.4 Da PI: 6.4576 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 676778872 | genome | VEGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 37.8 | 3.3e-12 | 327 | 373 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+h e+Er RR+++N++f Lr ++ + +K++Ka+ Le Av YI++L+
676778872 327 NHVEAERMRREKLNQKFYALRAVVANV-----TKMDKASLLEDAVTYINQLK 373
799*********************997.....8*****************95 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 496 aa
Download sequence Send
to blast |
MNPLNSDYDL SMIEAFLNSS DLLPLAPANL SLETALQERL HAVLNVTHEA WSYAIFWKPL 60
YNDISGESVL KWSDGVYKGE EGDKTLRRRK TNAEEKKHRN EVFRELSSMI SGISFPVMDD 120
DDDVELTDTE WFYLVSMTCT FRSGFGLAGK AFATYNPVWV TGTDKIHGSG CARANQGGDL 180
GLQTIVCIPS DNGVLELGST EQIRQNSDII QKIRFLINFE GSNDAPSLSS SHHFSSNVTS 240
NSNRDLHSSP VYPQIQNNII FSLATSSTPA TARSLETHSF GEGNISASGV KFEDSGSNID 300
AKATMPENKR HKKRGRKRMH GGEEPLNHVE AERMRREKLN QKFYALRAVV ANVTKMDKAS 360
LLEDAVTYIN QLKSLAEKAE SEKNAIQTQL NELSEEMTGR RNGSSSVCNS QKMASEIEVK 420
MNVKVMGCDA MIRVESSKRN HPGARLMNAF MDLEVEVNHA SISVINDLMI QQATVKMGLR 480
VYKQEQLRDL LFTKMN
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4rqw_A | 2e-47 | 33 | 219 | 6 | 194 | Transcription factor MYC3 |
| 4rqw_B | 2e-47 | 33 | 219 | 6 | 194 | Transcription factor MYC3 |
| 4rs9_A | 2e-47 | 33 | 219 | 6 | 194 | Transcription factor MYC3 |
| 4yz6_A | 2e-47 | 33 | 219 | 6 | 194 | Transcription factor MYC3 |
| Search in ModeBase |
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 82 | 88 | DKTLRRR |
| 2 | 83 | 89 | KTLRRRK |
| 3 | 308 | 316 | KRHKKRGRK |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Chen X,Huang H,Qi T,Liu B,Song S
New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis.
Plant Signal Behav, 2016. 11(2): p. e1135280
[PMID:26829586] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis.
Plant Physiol., 2017. 175(2): p. 628-640
[PMID:28864470] - Song S, et al.
MYC5 is Involved in Jasmonate-Regulated Plant Growth, Leaf Senescence and Defense Responses.
Plant Cell Physiol., 2017. 58(10): p. 1752-1763
[PMID:29017003] - Min JH, et al.
Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
Front Plant Sci, 2017. 8: p. 2100
[PMID:29321786]
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