PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676777928
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family M-type_MADS
Protein Properties Length: 521aa    MW: 58937 Da    PI: 8.5499
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676777928genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.51.7e-183072446
               -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
     SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
               +   +r+  +s R n+i+KKA ELS+LCd+ev+v++++ +gkl
  676777928 30 SAAKKRHSDLSSRENTIFKKATELSILCDVEVCVLYYGRDGKL 72
               556789999*********************************9 PP
2SRF-TF57.31.9e-18221263446
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
     SRF-TF   4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 
                +   +r+  +s R n+i+KKA ELS+LCd+ev+v++++ +gkl
  676777928 221 SAAKKRHSDLSSRENTIFKKATELSILCDVEVCVLYYGRDGKL 263
                556789999*********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-101078IPR002100Transcription factor, MADS-box
CDDcd002661.62E-1622104No hitNo description
SuperFamilySSF554551.96E-1532114IPR002100Transcription factor, MADS-box
PfamPF003191.6E-123372IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.6573479IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-54156IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-55677IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-8210269IPR002100Transcription factor, MADS-box
CDDcd002667.39E-16224295No hitNo description
PfamPF003191.6E-12224263IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-15224305IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.657225270IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MDSSSSSSTK MRTKLSVRHQ TRFKKSSLSS AAKKRHSDLS SRENTIFKKA TELSILCDVE  60
VCVLYYGRDG KLIKTLPEDQ SKVRDMAERF QNLSEKEKFK KRTNLSQFLN KKIKDEMKRC  120
LENNDNTFLH KVLEFEDSLR TKLRILENKQ TDEPDHQNQN LAVSSSSSFL SADDRSSSVL  180
INDPLMMNLS TSSQIYDQSR APSSSFTTTH LSPTLIXSLS SAAKKRHSDL SSRENTIFKK  240
ATELSILCDV EVCVLYYGRD GKLIKTLPED QSKVRDMAER FQNLSEKEKF KKRTNLSQFL  300
NKKIKDEMKR CLENNDNTFL HKVLEFEDSL RTKLRILENK QTDEPDHQNQ NLAVSSSSSF  360
LSADDRSSSV LINDPLMMNL STSSQIYDQS RAPSSSFTTT HLSPTLIGDP CQQQWTEPPL  420
PNHLSGVYSD SFTTDSLNHR PGKFSIFLFN HDSGSISQLP DSVSSFDQAT TPLNAGFLGS  480
QGFGLRSCSN NIGLPTVIPP HQMQTQDPLL HFGQFVAPNQ F
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676777928
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024006833.18e-89agamous-like MADS-box protein AGL93
SwissprotQ7X9N21e-65AGL53_ARATH; Agamous-like MADS-box protein AGL53
TrEMBLV4KLU22e-79V4KLU2_EUTSA; Uncharacterized protein
STRINGBostr.29827s0112.1.p3e-81(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM5753944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27070.12e-67AGAMOUS-like 53
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]