PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676777778

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

bHLH

Protein Properties

Length: 438aa MW: 47932.9 Da PI: 6.7332

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676777778	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.3	1.7e-05	312	357	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq 676777778 312 ASKKPRVRKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 357 5667799999************98.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.544	307	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.59E-6	310	361	No hit	No description
SMART	SM00353	9.8E-4	311	362	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.3E-11	313	369	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-8	321	364	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MDSANLHQLQ DQLQLVGSSS SSSSLENNSD PSCYGASSVH QWSPGGISLN SVSLSHNFNN 60 EMLNTRDHNN DNNTSECMSL SNIHNPSLIP QQDFSLQWSH DQSSYHHHEG IHKIKEELSS 120 STTSDHQQGM PKFTDMLTNP GITNYLKINE HKDYTKKLLL NSISSGFPIN GDYSSSLPSS 180 SSSNSSSSPS SQSHRGSFSQ IYPSVNISSL SESRRMSNIP RPFDMNMQVL DGRLFEGNVL 240 VPPLNSQEIS NLEMSRGSYP PFGLPFPHHL QQTLHHPSSS STHQMEMYSN EPQPSEGKRH 300 NFLMATKAGE NASKKPRVRK EKLGDRIAAL QQLVSPFGKT DTASVLMEAI GYIKFLQSQI 360 ETLSVPYMRS SRNRPGKASQ LGSLPQEGDD EEKRDLRSRG LCLVPLSCMT YVTGDGGDGG 420 GGVGSGFWPT PPGFGGGT

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MDSANLHQLQ DQLQLVGSSS SSSSLENNSD PSCYGASSVH QWSPGGISLN SVSLSHNFNN  60
EMLNTRDHNN DNNTSECMSL SNIHNPSLIP QQDFSLQWSH DQSSYHHHEG IHKIKEELSS  120
STTSDHQQGM PKFTDMLTNP GITNYLKINE HKDYTKKLLL NSISSGFPIN GDYSSSLPSS  180
SSSNSSSSPS SQSHRGSFSQ IYPSVNISSL SESRRMSNIP RPFDMNMQVL DGRLFEGNVL  240
VPPLNSQEIS NLEMSRGSYP PFGLPFPHHL QQTLHHPSSS STHQMEMYSN EPQPSEGKRH  300
NFLMATKAGE NASKKPRVRK EKLGDRIAAL QQLVSPFGKT DTASVLMEAI GYIKFLQSQI  360
ETLSVPYMRS SRNRPGKASQ LGSLPQEGDD EEKRDLRSRG LCLVPLSCMT YVTGDGGDGG  420
GGVGSGFWPT PPGFGGGT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676777778

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189555	0.0	AC189555.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006E24, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010478109.1	0.0	PREDICTED: transcription factor bHLH110 isoform X1
Swissprot	Q9SFZ3	0.0	BH110_ARATH; Transcription factor bHLH110
TrEMBL	A0A1J3EMR7	0.0	A0A1J3EMR7_NOCCA; Uncharacterized protein
STRING	Bostr.15697s0089.1.p	0.0	(Boechera stricta)
STRING	XP_010478109.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9351	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]