PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

GRAS

Protein Properties

Length: 610aa MW: 69717.8 Da PI: 5.3877

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676777702	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	401.5	8.2e-123	235	605	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +++lL++cA+av+s d+++a + L++++e++s++gd++qRl +++eAL+ar+++ ++k+ + + s++++++ l+a+k f++++P+l +++ taN+ 676777702 235 MRNLLMQCAQAVASFDQRRAAEKLKEIREHSSSHGDATQRLGYHLAEALEARITG----TMKTPISASFSRTSMVDILKAYKEFVQACPTLIMCYYTANR 330 579**************************************************....555555555666779********************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 +I e +++++++HiiDf+i +G+QWp+L+qaLasR++gpp+lR+Tg++ p++g +e++eetg+rL++f+++++vpfe+n+ +ak++e+++l+eL +++ 676777702 331 TIIELASKATTLHIIDFGILYGFQWPCLIQALASREGGPPMLRVTGIELPQPGfrPSERVEETGRRLKRFCDKFKVPFEYNF-IAKNWETITLDELVINS 429 ************************************************9*************************.7************ PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 gE+++Vn++l+l++++de+vsl+s+rd+ Lkl+++++P+++v++e + +ns+ Fl+rf ea+ ++s+lfd++e+++++e++ r+ vErel+ r++++v+ 676777702 430 GETTVVNCILRLQYTPDETVSLNSPRDTALKLFRDINPDLFVFAEINGMYNSPFFLTRFREAMFHCSSLFDMYETTISEENDCRTLVERELIIRDAMSVI 529 ************************************************************************************************ PP GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 acegaer++r et+++W+ r+ +aGF+p +l+++++k+ k l+r+ + + + ++++++++++gWk+r L+++S+W+ 676777702 530 ACEGAERFARPETYKQWQVRILRAGFRPTRLNKQIMKEGKELVRERYHKDFVIDNDNHWMFQGWKGRVLYALSCWK 605 *******************************************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.567	209	585	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.9E-120	235	605	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin

Sequence ? help Back to Top
Protein Sequence Length: 610 aa Download sequence Send to blast
MDAILPVPVD GFKFDKGSGS CCKPRNNLDS GTSRFPCFYE SQSSSPTEST ESQNTFPTET 60 TTESQNPSPT ESTVCSEYHP VLKYINDMLM EEDLEGQFRM LEDSLALQAA EKSFFEVLQE 120 DQTPLPSDQH DRSLGNLTSL HQQPTSGFTL TPEISEESTR RYRLRNDDEE DDLEGGRKSK 180 LPAISTVDEL AENLEEILLV CQKNDHGEAT PNKPGRAKVS SNRSKPQKSE QPVDMRNLLM 240 QCAQAVASFD QRRAAEKLKE IREHSSSHGD ATQRLGYHLA EALEARITGT MKTPISASFS 300 RTSMVDILKA YKEFVQACPT LIMCYYTANR TIIELASKAT TLHIIDFGIL YGFQWPCLIQ 360 ALASREGGPP MLRVTGIELP QPGFRPSERV EETGRRLKRF CDKFKVPFEY NFIAKNWETI 420 TLDELVINSG ETTVVNCILR LQYTPDETVS LNSPRDTALK LFRDINPDLF VFAEINGMYN 480 SPFFLTRFRE AMFHCSSLFD MYETTISEEN DCRTLVEREL IIRDAMSVIA CEGAERFARP 540 ETYKQWQVRI LRAGFRPTRL NKQIMKEGKE LVRERYHKDF VIDNDNHWMF QGWKGRVLYA 600 LSCWKPAKRQ

Sequence ? help Back to Top

Protein Sequence Length: 610 aa Download sequence Send to blast

MDAILPVPVD GFKFDKGSGS CCKPRNNLDS GTSRFPCFYE SQSSSPTEST ESQNTFPTET  60
TTESQNPSPT ESTVCSEYHP VLKYINDMLM EEDLEGQFRM LEDSLALQAA EKSFFEVLQE  120
DQTPLPSDQH DRSLGNLTSL HQQPTSGFTL TPEISEESTR RYRLRNDDEE DDLEGGRKSK  180
LPAISTVDEL AENLEEILLV CQKNDHGEAT PNKPGRAKVS SNRSKPQKSE QPVDMRNLLM  240
QCAQAVASFD QRRAAEKLKE IREHSSSHGD ATQRLGYHLA EALEARITGT MKTPISASFS  300
RTSMVDILKA YKEFVQACPT LIMCYYTANR TIIELASKAT TLHIIDFGIL YGFQWPCLIQ  360
ALASREGGPP MLRVTGIELP QPGFRPSERV EETGRRLKRF CDKFKVPFEY NFIAKNWETI  420
TLDELVINSG ETTVVNCILR LQYTPDETVS LNSPRDTALK LFRDINPDLF VFAEINGMYN  480
SPFFLTRFRE AMFHCSSLFD MYETTISEEN DCRTLVEREL IIRDAMSVIA CEGAERFARP  540
ETYKQWQVRI LRAGFRPTRL NKQIMKEGKE LVRERYHKDF VIDNDNHWMF QGWKGRVLYA  600
LSCWKPAKRQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-43	241	606	25	380	Protein SCARECROW
5b3h_A	3e-43	241	606	24	379	Protein SCARECROW
5b3h_D	3e-43	241	606	24	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676777702

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013711631.1	0.0	scarecrow-like protein 30 isoform X1
Swissprot	Q9SNB8	0.0	SCL30_ARATH; Scarecrow-like protein 30
TrEMBL	A0A0D3A8U7	0.0	A0A0D3A8U7_BRAOL; Uncharacterized protein
STRING	Bo1g070830.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3646	25	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46600.1	0.0	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]