PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676777702
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GRAS
Protein Properties Length: 610aa    MW: 69717.8 Da    PI: 5.3877
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676777702genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS401.58.2e-1232356051374
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                +++lL++cA+av+s d+++a + L++++e++s++gd++qRl  +++eAL+ar+++    ++k+  + + s++++++ l+a+k f++++P+l +++ taN+
  676777702 235 MRNLLMQCAQAVASFDQRRAAEKLKEIREHSSSHGDATQRLGYHLAEALEARITG----TMKTPISASFSRTSMVDILKAYKEFVQACPTLIMCYYTANR 330
                579****************************************************....555555555666779************************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                +I e +++++++HiiDf+i +G+QWp+L+qaLasR++gpp+lR+Tg++ p++g   +e++eetg+rL++f+++++vpfe+n+ +ak++e+++l+eL +++
  676777702 331 TIIELASKATTLHIIDFGILYGFQWPCLIQALASREGGPPMLRVTGIELPQPGfrPSERVEETGRRLKRFCDKFKVPFEYNF-IAKNWETITLDELVINS 429
                ****************************************************9*****************************.7**************** PP

       GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                gE+++Vn++l+l++++de+vsl+s+rd+ Lkl+++++P+++v++e +  +ns+ Fl+rf ea+ ++s+lfd++e+++++e++ r+ vErel+ r++++v+
  676777702 430 GETTVVNCILRLQYTPDETVSLNSPRDTALKLFRDINPDLFVFAEINGMYNSPFFLTRFREAMFHCSSLFDMYETTISEENDCRTLVERELIIRDAMSVI 529
                **************************************************************************************************** PP

       GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                acegaer++r et+++W+ r+ +aGF+p +l+++++k+ k l+r+ + + + ++++++++++gWk+r L+++S+W+
  676777702 530 ACEGAERFARPETYKQWQVRILRAGFRPTRLNKQIMKEGKELVRERYHKDFVIDNDNHWMFQGWKGRVLYALSCWK 605
                ***********************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.567209585IPR005202Transcription factor GRAS
PfamPF035142.9E-120235605IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MDAILPVPVD GFKFDKGSGS CCKPRNNLDS GTSRFPCFYE SQSSSPTEST ESQNTFPTET  60
TTESQNPSPT ESTVCSEYHP VLKYINDMLM EEDLEGQFRM LEDSLALQAA EKSFFEVLQE  120
DQTPLPSDQH DRSLGNLTSL HQQPTSGFTL TPEISEESTR RYRLRNDDEE DDLEGGRKSK  180
LPAISTVDEL AENLEEILLV CQKNDHGEAT PNKPGRAKVS SNRSKPQKSE QPVDMRNLLM  240
QCAQAVASFD QRRAAEKLKE IREHSSSHGD ATQRLGYHLA EALEARITGT MKTPISASFS  300
RTSMVDILKA YKEFVQACPT LIMCYYTANR TIIELASKAT TLHIIDFGIL YGFQWPCLIQ  360
ALASREGGPP MLRVTGIELP QPGFRPSERV EETGRRLKRF CDKFKVPFEY NFIAKNWETI  420
TLDELVINSG ETTVVNCILR LQYTPDETVS LNSPRDTALK LFRDINPDLF VFAEINGMYN  480
SPFFLTRFRE AMFHCSSLFD MYETTISEEN DCRTLVEREL IIRDAMSVIA CEGAERFARP  540
ETYKQWQVRI LRAGFRPTRL NKQIMKEGKE LVRERYHKDF VIDNDNHWMF QGWKGRVLYA  600
LSCWKPAKRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-4324160625380Protein SCARECROW
5b3h_A3e-4324160624379Protein SCARECROW
5b3h_D3e-4324160624379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676777702
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013711631.10.0scarecrow-like protein 30 isoform X1
SwissprotQ9SNB80.0SCL30_ARATH; Scarecrow-like protein 30
TrEMBLA0A0D3A8U70.0A0A0D3A8U7_BRAOL; Uncharacterized protein
STRINGBo1g070830.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]