PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

676776378

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

GeBP

Protein Properties

Length: 339aa MW: 38210.4 Da PI: 7.1209

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676776378	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	87.6	1.6e-27	116	206	4	97
DUF573 4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 ++l+se+D i+lLqG++dfka+++k+p +d ++yef+k+s+sf+++ +q+ eKir+++k ++ k+k g + s+ ++h++k+fel k iWg 676776378 116 KKLFSEKDVILLLQGMLDFKADKEKNPLEDKRGLYEFIKDSLSFDATFNQFKEKIRNIQKLYTSKEKS---GGQASILNPHQKKCFELYKAIWG 206 789**********************************************************99998...9999****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	6.2E-22	116	206	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MAKDLKHHPL EAPSLASLSS SEKEMEVISS DEEEREDYHT IFSAEEEEPE DPPQRSSSKA 60 VCGSGEAHPS AWAVKSGTKR LSGGTSANVI LKQAKKLSTG GDEKKGANRK QLFRRKKLFS 120 EKDVILLLQG MLDFKADKEK NPLEDKRGLY EFIKDSLSFD ATFNQFKEKI RNIQKLYTSK 180 EKSGGQASIL NPHQKKCFEL YKAIWGAEVI AVDSAISPNG EPKVSEWGVT KKLNFVSSRN 240 DKNVGENSKR GDMEESPLVV TESDWDENSF FLGMDYMKES WSKVPIESKK KIQEKMKKLQ 300 ADEFECKKVE EMLKAMKDQC AHKKVELLNE VTALIMASS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676776378

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013633106.1	1e-107	PREDICTED: mediator-associated protein 1-like
TrEMBL	A0A397ZSQ5	5e-97	A0A397ZSQ5_BRACM; Uncharacterized protein
STRING	Bra028105.1-P	2e-92	(Brassica rapa)
STRING	Bo4g136340.1	5e-93	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13542	7	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66420.1	4e-44	DNA-binding storekeeper protein-related transcriptional regulator