PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676775532
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GRAS
Protein Properties Length: 508aa    MW: 56425.9 Da    PI: 5.8644
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676775532genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS322.11.2e-981305011373
       GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshl 96 
                lv+lL+++Aea +  +++  l++ lLarl++l+sp++ ++m+Rlaa+ft++L+    +   ++ +++ p ++ + ++++++++al++++++sP+++f++l
  676775532 130 LVHLLVAAAEASTGANKTreLTRVLLARLKDLVSPNDrTNMERLAAHFTNGLSMLHEG--GNVHQQCgPHQHRDVHDQADVISALQILQNMSPYVNFGYL 227
                689********9987765559***********9999989*************987766..66666662555555556*********************** PP

       GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                ta qaIleav+ e+r+Hi+D+di++G+QWp+L+qaL sR+   ++ +lRiT+++++++g  s  +++e g+rL+ fAe++g pf+++     + ++++++
  676775532 228 TATQAILEAVKYERRIHIVDYDITEGVQWPSLMQALVSRNtdLSAQHLRITALSRATNGkkSVAAVQEAGRRLTAFAESIGQPFSYHH-CRMDSDTFNPS 326
                ****************************************655688*********999999999***********************9.7889******* PP

       GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                +L++ +gEa+++n++l+l r+ +++ ++     ++L+  k+l+Pk+v++v++e+ + +++ Fl rf++ l+ +sa+fdsle++      +r +vEr+++g
  676775532 327 SLKLVRGEAMVINCMLHLPRFSHQTPNSII---SFLSEAKTLNPKLVTLVHEEVGLmGNQGFLYRFMDLLHQFSAIFDSLETG-----PARGFVERVFIG 418
                *********************977776666...9*********************99**************************.....9*********** PP

       GRAS 292 reivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaW 373
                ++++ +++    +   ++ e++++W  +l + GFkpv +s  + +qaklll+ ++ dgyrvee   + lvlgWk+r+Lvs+S+W
  676775532 419 PWVSGWLTRIAISgNDAEVESVASWPLWLANNGFKPVDVSFANRCQAKLLLSLFN-DGYRVEELgPNGLVLGWKSRRLVSASFW 501
                *****9988776657799*************************************.******99567888************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.592104482IPR005202Transcription factor GRAS
PfamPF035144.0E-96130501IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MKPLFSWVPL HGRTLYNCAL PVSSCLTSTI MNHPYDDFLD LFFSSNIATA ASTSSCVEQH  60
DGVSLDMDWD CDFRDLLESM LTDEGAMTEY PPMQSGHHGQ EGICNSTTTD FSMVDAVDDV  120
EADESKGLRL VHLLVAAAEA STGANKTREL TRVLLARLKD LVSPNDRTNM ERLAAHFTNG  180
LSMLHEGGNV HQQCGPHQHR DVHDQADVIS ALQILQNMSP YVNFGYLTAT QAILEAVKYE  240
RRIHIVDYDI TEGVQWPSLM QALVSRNTDL SAQHLRITAL SRATNGKKSV AAVQEAGRRL  300
TAFAESIGQP FSYHHCRMDS DTFNPSSLKL VRGEAMVINC MLHLPRFSHQ TPNSIISFLS  360
EAKTLNPKLV TLVHEEVGLM GNQGFLYRFM DLLHQFSAIF DSLETGPARG FVERVFIGPW  420
VSGWLTRIAI SGNDAEVESV ASWPLWLANN GFKPVDVSFA NRCQAKLLLS LFNDGYRVEE  480
LGPNGLVLGW KSRRLVSASF WASCESNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-3817150141374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676775532
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009120074.10.0PREDICTED: scarecrow-like protein 26 isoform X1
RefseqXP_013669922.10.0scarecrow-like protein 26
RefseqXP_013714089.10.0scarecrow-like protein 26
SwissprotQ9SUF50.0SCL26_ARATH; Scarecrow-like protein 26
TrEMBLA0A078I6E30.0A0A078I6E3_BRANA; BnaC09g32140D protein
STRINGBra002894.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99142736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.10.0GRAS family protein