PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

676774836

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

bHLH

Protein Properties

Length: 235aa MW: 27433.5 Da PI: 9.5113

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676774836	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.1	1.6e-13	25	76	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++h e+Er+RR+++ s + Lr+llP + ++K s a+ + +Av+Y+ +Lq 676774836 25 KMMHREIERQRRQEMASLYTSLRSLLPLHF--IKGKRSTADQVNEAVNYVMYLQ 76 789***********************65..*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.1E-14	21	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.694	23	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-10	25	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.02E-9	25	80	No hit	No description
Pfam	PF00010	1.1E-10	25	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.5E-7	29	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MDDCREKRRR CTKLRVSTDN NDMEKMMHRE IERQRRQEMA SLYTSLRSLL PLHFIKGKRS 60 TADQVNEAVN YVMYLQRKIK ELSSRRDELV LLSKGNLDDS KDEMVVGNHV VVHQCLLGVE 120 IVFGTRCCRG QPRLSRVLEV LSENGLSVLH SISSIVDDKL IYTIQAERLK LDNVSVNDSL 180 LTERAKWPKT WRTCNSPCSS HPQYRQQMRN RQFSSIRIKG DEAFESAMEM WLATR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676774836

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013674763.1	1e-97	transcription factor bHLH36-like
Refseq	XP_013710558.1	1e-97	transcription factor bHLH36-like
Swissprot	Q9FLI1	2e-72	BH036_ARATH; Transcription factor bHLH36
TrEMBL	A0A078IC52	2e-96	A0A078IC52_BRANA; BnaAnng08070D protein
TrEMBL	A0A3P6A1T7	2e-96	A0A3P6A1T7_BRACM; Uncharacterized protein
STRING	Bra022562.1-P	7e-97	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4479	27	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51780.1	6e-75	bHLH family protein