PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676774080

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

LBD

Protein Properties

Length: 310aa MW: 34579.9 Da PI: 4.4436

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676774080	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136	1.4e-42	5	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrrkC+++Cv+apyfp +qp+kf vhk+FGasnv+k+l++lp+ +reda++sl+yeAear+rdP+yG+vg+i+ lqq l++ +++l+++kee 676774080 5 PCAACKLLRRKCTQECVFAPYFPPTQPQKFISVHKVFGASNVTKILNDLPPPNREDAVNSLYYEAEARIRDPIYGCVGLISFLQQCLKKIQQDLVTAKEE 104 7**********************************************************************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	2.4E-107	2	308	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	26.87	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.7E-41	5	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MASTPCAACK LLRRKCTQEC VFAPYFPPTQ PQKFISVHKV FGASNVTKIL NDLPPPNRED 60 AVNSLYYEAE ARIRDPIYGC VGLISFLQQC LKKIQQDLVT AKEELAGYIG PDAVIPQQPY 120 LPPLSNNPPP NFMMAMEGMP HGVIPQGEPL IIRETNLSQH QHQPQSQDEQ MQLMAADAQR 180 MAAMILDRGD QQGMFNGYGI DNNGSVTSTG YNQMDVNDHV AGGSLSGPSL ALGSFGDAYQ 240 MGQETEHHIN HDQLQTQLML QPPLQEVQEQ NEGQFLMQPM GQENLHEDEE EDDLEPPVKW 300 RKSENKEASY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-46	2	108	8	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-46	2	108	8	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676774080

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473835	0.0	AB473835.1 Arabidopsis thaliana ASL2 mRNA for ASYMMETRIC LEAVES2-like 2 protein, complete cds.
GenBank	AC003040	0.0	AC003040.3 Arabidopsis thaliana chromosome 2 clone F26B6 map CIC06C07, complete sequence.
GenBank	AC004482	0.0	AC004482.3 Arabidopsis thaliana chromosome 2 clone F27L4 map CIC06C07, complete sequence.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009140479.1	0.0	PREDICTED: LOB domain-containing protein 10
Refseq	XP_009140482.1	0.0	PREDICTED: LOB domain-containing protein 10
Refseq	XP_013634802.1	0.0	PREDICTED: LOB domain-containing protein 10
Refseq	XP_013746972.1	0.0	LOB domain-containing protein 10
Refseq	XP_018513999.1	0.0	PREDICTED: LOB domain-containing protein 10
Swissprot	O64836	1e-179	LBD10_ARATH; LOB domain-containing protein 10
TrEMBL	A0A0D3C1I7	0.0	A0A0D3C1I7_BRAOL; Uncharacterized protein
TrEMBL	A0A291LQY8	0.0	A0A291LQY8_BRARR; Transcription factor LBD10
TrEMBL	A0A397ZS71	0.0	A0A397ZS71_BRACM; Uncharacterized protein
TrEMBL	A0A3N6T4S2	0.0	A0A3N6T4S2_BRACR; Uncharacterized protein
TrEMBL	A0A3P6CBS8	0.0	A0A3P6CBS8_BRAOL; Uncharacterized protein
TrEMBL	M4ETM1	0.0	M4ETM1_BRARP; Uncharacterized protein
STRING	Bra032153.1-P	0.0	(Brassica rapa)
STRING	Bo4g151770.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14908	17	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23660.2	1e-149	LOB domain-containing protein 10

Publications ? help Back to Top
Kim MJ,Kim M,Kim J Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis. Plant Signal Behav, 2015. 10(8): p. e1044193 [PMID:26252070] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]