PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676772292 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | C2H2 | ||||||||
Protein Properties | Length: 213aa MW: 23782.2 Da PI: 6.7921 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00022 | 59 | 81 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H 676772292 59 FSCNYCRRKFYSSQALGGHQNAH 81 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.27E-6 | 56 | 87 | No hit | No description |
PROSITE profile | PS50157 | 11.385 | 59 | 86 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 61 | 81 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MTDSDDASRE VPAREGETSS DQDLSKHESI TPVSLDLKLN DTFNDDTKGT KCESNPRVFS 60 CNYCRRKFYS SQALGGHQNA HKRERTMAKR AMHMGRMFGH HHRPYTYTSS SLGMQAHSGL 120 LHHSLSQPQS TPPLARFHHQ GYFGNTVPVF FDYDDSSDFF WPGSFRQVVE EAEAPVLVAA 180 VTESGLDLNK AATNGCVVDN NNNSSKPDLT LRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676772292 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006415825.1 | 1e-139 | zinc finger protein 7 | ||||
Refseq | XP_024008975.1 | 1e-139 | zinc finger protein 7 | ||||
Swissprot | Q39266 | 1e-128 | ZFP7_ARATH; Zinc finger protein 7 | ||||
TrEMBL | E4MW40 | 1e-137 | E4MW40_EUTHA; mRNA, clone: RTFL01-07-G06 | ||||
TrEMBL | V4L356 | 1e-137 | V4L356_EUTSA; Uncharacterized protein | ||||
STRING | XP_006415825.1 | 1e-138 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13999 | 17 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24625.1 | 1e-94 | zinc finger protein 7 |
Publications ? help Back to Top | |||
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