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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676772180 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | SBP | ||||||||
Protein Properties | Length: 396aa MW: 43980 Da PI: 9.0338 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 125.4 | 2.4e-39 | 175 | 251 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv+gC dls+ak+yhr+h++Ce+hsk+p+v+v gle+rfCqqCsr h++sefDe+krsCr+rL++hn+rrrk+q 676772180 175 RCQVDGCGLDLSSAKDYHRKHRICEKHSKCPKVTVGGLERRFCQQCSRLHAVSEFDEKKRSCRKRLSHHNARRRKPQ 251 6**************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 9.6E-33 | 168 | 237 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.744 | 173 | 250 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.49E-37 | 174 | 252 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 9.3E-31 | 176 | 249 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010358 | Biological Process | leaf shaping | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MDSNMVSSLW DWEHLFMSNP PKTENDKKHP STEWEIEKGE GIESIFPCFS GLERVSNGST 60 TGFWHSSVSK SSQSTSTNSS SPLVKQTKLA SESSPGDSCS NIDFVQMKTS TALEVSFASA 120 ESDLCLKLGK QTYFKERWGR NNNNDISSVS VKLLTPSVVA RKKSKPCGQS SQVPRCQVDG 180 CGLDLSSAKD YHRKHRICEK HSKCPKVTVG GLERRFCQQC SRLHAVSEFD EKKRSCRKRL 240 SHHNARRRKP QGVFPLNPER VCNRRQHPNM LWNGLSLNTS SDQNYGWDTT YDTKLTQMET 300 GFTLSFQRGH GPEDQLYAGS SRSFSAFQTS GGFSAGKSNS QLPSKGVGEY SGGPHESQDL 360 YSALSLLSTS TNSHGTKHNP MVEPQPIHGT LPTHFI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-25 | 170 | 249 | 5 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 231 | 248 | KKRSCRKRLSHHNARRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676772180 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006415770.1 | 0.0 | squamosa promoter-binding-like protein 10 | ||||
Refseq | XP_006415771.1 | 0.0 | squamosa promoter-binding-like protein 10 | ||||
Refseq | XP_024009069.1 | 0.0 | squamosa promoter-binding-like protein 10 | ||||
Swissprot | Q8S9L0 | 0.0 | SPL10_ARATH; Squamosa promoter-binding-like protein 10 | ||||
TrEMBL | V4L301 | 0.0 | V4L301_EUTSA; Uncharacterized protein | ||||
STRING | XP_006415770.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5004 | 16 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27370.4 | 0.0 | squamosa promoter binding protein-like 10 |
Publications ? help Back to Top | |||
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