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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
676772180 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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| Family |
SBP |
| Protein Properties |
Length: 396aa MW: 43980 Da PI: 9.0338 |
| Description |
SBP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 676772180 | genome | VEGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SBP | 125.4 | 2.4e-39 | 175 | 251 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77
+Cqv+gC dls+ak+yhr+h++Ce+hsk+p+v+v gle+rfCqqCsr h++sefDe+krsCr+rL++hn+rrrk+q
676772180 175 RCQVDGCGLDLSSAKDYHRKHRICEKHSKCPKVTVGGLERRFCQQCSRLHAVSEFDEKKRSCRKRLSHHNARRRKPQ 251
6**************************************************************************97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010358 | Biological Process | leaf shaping |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 396 aa
Download sequence Send
to blast |
MDSNMVSSLW DWEHLFMSNP PKTENDKKHP STEWEIEKGE GIESIFPCFS GLERVSNGST 60
TGFWHSSVSK SSQSTSTNSS SPLVKQTKLA SESSPGDSCS NIDFVQMKTS TALEVSFASA 120
ESDLCLKLGK QTYFKERWGR NNNNDISSVS VKLLTPSVVA RKKSKPCGQS SQVPRCQVDG 180
CGLDLSSAKD YHRKHRICEK HSKCPKVTVG GLERRFCQQC SRLHAVSEFD EKKRSCRKRL 240
SHHNARRRKP QGVFPLNPER VCNRRQHPNM LWNGLSLNTS SDQNYGWDTT YDTKLTQMET 300
GFTLSFQRGH GPEDQLYAGS SRSFSAFQTS GGFSAGKSNS QLPSKGVGEY SGGPHESQDL 360
YSALSLLSTS TNSHGTKHNP MVEPQPIHGT LPTHFI
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 231 | 248 | KKRSCRKRLSHHNARRRK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Yu N,Niu QW,Ng KH,Chua NH
The role of miR156/SPLs modules in Arabidopsis lateral root development.
Plant J., 2015. 83(4): p. 673-85
[PMID:26096676] - Xu M, et al.
Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
PLoS Genet., 2016. 12(8): p. e1006263
[PMID:27541584] - Gao R,Wang Y,Gruber MY,Hannoufa A
miR156/SPL10 Modulates Lateral Root Development, Branching and Leaf Morphology in Arabidopsis by Silencing AGAMOUS-LIKE 79.
Front Plant Sci, 2017. 8: p. 2226
[PMID:29354153] - Dotto M,Gómez MS,Soto MS,Casati P
UV-B radiation delays flowering time through changes in the PRC2 complex activity and miR156 levels in Arabidopsis thaliana.
Plant Cell Environ., 2018. 41(6): p. 1394-1406
[PMID:29447428]
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