PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676772178
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family SBP
Protein Properties Length: 388aa    MW: 43490.3 Da    PI: 8.484
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676772178genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP124.44.7e-39174250177
                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                +Cq++gC+ dls+ak+yhr+h+vCe+hsk+p+v+vsg+e+rfCqqCsr h++sefDe+krsCr+rL++hn+rrrk+q
  676772178 174 RCQIDGCDLDLSSAKDYHRKHRVCEKHSKCPKVTVSGVERRFCQQCSRLHAVSEFDEKKRSCRKRLSHHNARRRKPQ 250
                6**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.4E-32167236IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.778172249IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.49E-36173251IPR004333Transcription factor, SBP-box
PfamPF031102.4E-30175248IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MDCNMRSPML WDWENLIMSN PSKTENDKKQ LTTEWEIEKG EGIESIFPSF DGLERVSDGS  60
TTSFWHTTAV SKSSQSTSSN SSSPKVKQCK PASESSPGDS CSNIDFVQVK TSTALEVSAE  120
SDLCLKLGKR TYSEELWGRD NNNHTSAVSM TLLTPSVVAR KKSKSYGQSM QVPRCQIDGC  180
DLDLSSAKDY HRKHRVCEKH SKCPKVTVSG VERRFCQQCS RLHAVSEFDE KKRSCRKRLS  240
HHNARRRKPQ GVFQSNPERV YDQRQHTNMV WNGLSLNTSS PEKFAWDTTY DTKPTQMESG  300
FTLSFQRSNG SEEQLFASSN HSFSAYQTSG GFSAGKTKFQ LHGEGVGEYS GVLHQSQDFN  360
RALSLLSTSS DPPVHPRSLL FSFDGVPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-251752481184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230247KKRSCRKRLSHHNARRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00161DAPTransfer from AT1G27360Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676772178
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010499210.10.0PREDICTED: squamosa promoter-binding-like protein 11
RefseqXP_010499211.10.0PREDICTED: squamosa promoter-binding-like protein 11
RefseqXP_010499212.10.0PREDICTED: squamosa promoter-binding-like protein 11
RefseqXP_010499213.10.0PREDICTED: squamosa promoter-binding-like protein 11
SwissprotQ9FZK00.0SPL11_ARATH; Squamosa promoter-binding-like protein 11
TrEMBLR0GPQ00.0R0GPQ0_9BRAS; Uncharacterized protein
STRINGBostr.15697s0062.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50041653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27360.40.0squamosa promoter-like 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Stief A, et al.
    Arabidopsis miR156 Regulates Tolerance to Recurring Environmental Stress through SPL Transcription Factors.
    Plant Cell, 2014. 26(4): p. 1792-1807
    [PMID:24769482]
  3. Liu J, et al.
    The RhoGAP SPIN6 associates with SPL11 and OsRac1 and negatively regulates programmed cell death and innate immunity in rice.
    PLoS Pathog., 2015. 11(2): p. e1004629
    [PMID:25658451]
  4. Xu M, et al.
    Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(8): p. e1006263
    [PMID:27541584]